Cros002127.1
Basic Information
- Insect
- Choristoneura rosaceana
- Gene Symbol
- TIGD6
- Assembly
- GCA_037349165.1
- Location
- JAZBNJ010000005.1:8138614-8140374[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 1.4e-08 2.3e-05 24.9 0.0 3 36 17 50 15 55 0.76
Sequence Information
- Coding Sequence
- ATGCCCCGAAACCGGCAGAGGACTACCGAAAAAGCAGCGTGGCGTGAAGAAGACTTACGCAATGCAAAAACAGCAGTGGAGGGAGGGATGTCTAAGAGACGAGCAGCCAAAACATTCAATATTCCATTTTCTACATTCAGAGAAAGACTGATGAATGAAAATCTGATTGATCCGCAGCTAGGTCGTAAGCAAGTTTTTACTAAGGAgcaagaaacagaaatagctgAACAGTATGCacaacttaaaaatattaaaaataccttTGATCAAAATAGCCAAACGGCGGGAATGGATTGGGTGAAGGGCTTCATGAAACGCAACCCTTCTGTTACTGTACGCAAAGCTGAAGCCACAAGCTTAAATAGGGTATCTGCCTTTAACAAAGAAGAAGTAACTAGCTTCTACAATTTGCTTGGTGACCTGATGGAAAAACACAAATTCCTacctaataatatatataatgctGACGAGACTGGGGTTACAACAGTTGCAGATCCAGGGAAGGTGCTAGCAAAAAAAGGCCAGCGACGTGTAGGAGCGGTTACCAGCGGCGAACGAGGTAGAAATATAACTGTCATGTGTGCCATGAGTGCAGCTGGTAACTTCGTACCGCCAATGTTCATCTATCCCCGACAGCGAATGACACCATTATTAGAAAAGGATGGCCCACCTGGTGCAATATACACATGCTCTAAAAACGGTTGGATAAATGAGGATTTGTTCGTCCACTGGCTAAAACATTTTGTTGCATATACTAAACCCACGCAAGACTCTCCTGTCCTACTAATACTAGATAATCATAGCAGTCATATCTCGCTGCCAGCTTACAATTTTTGCAAAGAAGATAACGTTGTCATGCTTTCTATTCCACCACACAGCTCGCACAGAACTCAACCTCTTGATGTATCTTTTTACGGTCCTTTAAAGGCCGCTTACAGGCAGGAGTGTAATCGGTACATGAAGAGTCATTTAATGGCTAAAGTAACTCCGTATGATGTTGCAGCTTTATACAACAAAGCCTATGCACAAGTTGCAAATATTAGCAAAGGAGAAGCTGGATTCCGAGCCACAGGCATATACCCTTTAAATCCTAATGTTTTCAACGATCAAGACTTCTTAGCAGCGTCGATGATGGCTCCAGATGCAGACCAATCAATTCCGTCTATAGAAGATTGTGAAATAAACAGTCTTACCCCAGCTCAGTCTCTTGGTACAgttaattcttcttcttcttctgctTCTACAGTGCCTATTCAATTGGTTAGGACACCTGATCTCCCACGCCataatacaacaatacaatctCCTGAACCAGGTCCATCAAATGATCCTCGGCATAACTACGAAACGTCTGTTTCTGGTACACTTATCCCAGCACAATTTGACGAGCAAAGACCCTTGACTCCTGTTTGTTTTGCTGCCGTTGCACCAACTCCTAAAAGTCAGCCATCTGTGCAAGTAACTCGAAAAACGACAAGAAAACAACATGCAGCTATATTAACAGCCACCCCATTAAAAACCGTTTTAGAAGAAAAGGAAAACAAAAAGAATGCTAAGAAGAATAATAAAGATGGGAAAGACAAAATGAAAACTGCTTCGTCAAAGGGAGGAGCTagaaacaaaaaactaaaatcgGTTTCATCAACAGCTCCAGTATTGagagattataataaaaataagcagTGGGAACAGTAA
- Protein Sequence
- MPRNRQRTTEKAAWREEDLRNAKTAVEGGMSKRRAAKTFNIPFSTFRERLMNENLIDPQLGRKQVFTKEQETEIAEQYAQLKNIKNTFDQNSQTAGMDWVKGFMKRNPSVTVRKAEATSLNRVSAFNKEEVTSFYNLLGDLMEKHKFLPNNIYNADETGVTTVADPGKVLAKKGQRRVGAVTSGERGRNITVMCAMSAAGNFVPPMFIYPRQRMTPLLEKDGPPGAIYTCSKNGWINEDLFVHWLKHFVAYTKPTQDSPVLLILDNHSSHISLPAYNFCKEDNVVMLSIPPHSSHRTQPLDVSFYGPLKAAYRQECNRYMKSHLMAKVTPYDVAALYNKAYAQVANISKGEAGFRATGIYPLNPNVFNDQDFLAASMMAPDADQSIPSIEDCEINSLTPAQSLGTVNSSSSSASTVPIQLVRTPDLPRHNTTIQSPEPGPSNDPRHNYETSVSGTLIPAQFDEQRPLTPVCFAAVAPTPKSQPSVQVTRKTTRKQHAAILTATPLKTVLEEKENKKNAKKNNKDGKDKMKTASSKGGARNKKLKSVSSTAPVLRDYNKNKQWEQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -