Cros015142.1
Basic Information
- Insect
- Choristoneura rosaceana
- Gene Symbol
- -
- Assembly
- GCA_037349165.1
- Location
- JAZBNJ010000020.1:5012187-5015081[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.3e-09 2.2e-06 28.2 0.0 1 39 16 55 16 59 0.93 2 2 0.59 1e+03 0.5 0.0 24 38 871 885 871 889 0.86
Sequence Information
- Coding Sequence
- atGCCTCGAAAATACTCAAGAAAGACATCACGGGCGACTTCGTATACGCAAGAAGCCCTAGAAATagcaatcaaaaaaataaaaaacaaagaacTATCGTACAGTGCTGCTTCACGAACGTTCGGTATACCGACATCAACGCTGAGTGATAGAGTTCTTCAAAAAACAGCATTAGTCAGCAAAACACTTGGCAGATCAACAGCGATCCCAATGGAGTTGGAAAAAAAACTGGCTAATAGTCTTCGTGTGATGGAAAAATGGGGTTGGGGTTTGTCGAGAGAAGAGGTACTTGATGTAACTGAGGAGTTTgtaaaaagaaataatttagaaaCACCCTTTAACAATGGAAGACCTGGGCCAGACTGGTTTATATCTTTTCGAAAGCGGCACAATTTATCTATAAAAAAACCGCAACCTGTAGAGTACCTTAGGAAAAGAATGACGGATCCTTTTATCATCCATGAATATTTTACTCTATTAGAAACAACTCTTCgtgaattaaatataaatgatcCGAAGCGTATATGGAACTTGGATGAAACCTCGGTTTGTTTTGACCCTACAAAAACAAAAGTTGTAGGGGGCAAAGGAGAGCCTTGCACACGAACAACATATGGAAACGCTAAAGAAAATGTCACAGTTTTGACTACTGTAAATGCGGCTGGGGACAAGCTAGACCCCTTGATCGTATTTAAAGGCAAATATATGTACAAACAATGGATGCTGGAGAATCCAGATGAATACGATTTCCAGCTTACATATGCTGCCAGCAAACGGGGATGGATGGAaagtgatattttttataactaCATGCTAAACGTAGTTATTCCTAATCTAGGTGAAGAACGACCCGTATTGTTATTGTATGATGGACATGTTAGCCATGTTGATGACAGAGTGGTGGCATTAGCAGTTGAAAACCATATCACTATAATAAAGCTTCCTGCACACACGTCGCATTTACTGCAGCCGCTGGATTTAGCtgtatttaaatcatttaaagcCATCTGGGACAAAAACCTCGTTAAATGGCAGCGGCAAAACATTGGcgtcaagttacaaaaacaagGTTTTTCCAGAATGTTTGCGGAAGCATGGAAAGAAACAAAACCAAAGGTTATACAAAATGGTTTTGCAAAAGGAGGTATTTACCCTTTCAATGCCAACTGCATACCAAAAGAGAAATTTGACCCTAAAGCATACGCGCGATGGCAAACGCAGATGTCTCAAATGATTTTCAAAGAACCCAAAGCCCTTAAACAGTTATGTTTAGACAAAATAAATACGAACATGTCTTATAATAGCCATGCTGCTGCACAGAATTGTACAGATATTCATTCCGAAACAGCAAACTCTATTCAAGAAGGAACATCGCAACCAGTAAACATATCCTTCGAAGAACTTCTACTAGACAAAGTTACACAACATGCACAGCACAAGGCACCCGTTAAATTGAAACGCTTTGCAAAGGGTTCAGAAGTAATTACAAAAACTTTCATAGAAAAGCAAAAAGAAatagaattaaataaaaccaGTGAAACACAAGTACAGAAAACTAAAAAACCTATAAAAAAACCAGTACCTCAATCTGAAAAGCATGTAGCTGACCTCGTAATGCCAGGGCCATCTGGGATTCAGAAAACGAAGTTGAAAAAGAAGAAAGGTAAAGACTTTGCACCAATTTCTGACCTCATAAAGCCAGGACCGTCTGGAATTCAGAAAACAAAGTTGAAAAAGGAGAAAGCTAAAGACGTTGCACCAATTTTAACGGAAATGACTAATATAAATAACGTGAAGAAAGATAATGTATTGGAAAGTAAACCTACTAAGAAAGGAAAAGGTATTGGAAAAAAAACTCGTACTGACATAGAAAATCAAACTCCAAAAAGTTATGAAACATGTGTCGACAACAATATAAGCTACAATACGACGGACTTGACAGTTCCGAACGAACTAAAAATGACCAAAACACTTAGAGacacaaaaaaatatgtctcaaaaaacaaaaagacgTTTTTTACAGACGTGACTGCGAAAAAACGTAAGAGGGCTTCCAGTGCTAGTACTATTACGACAATTGAAAGCATTCAAATGAGCGTCCATAGTGATTCTGATTTGTTTGATTCTATCAGCGATATATTATCTGACTGCAGTGAATGGAATAAGACTGACTCTGTAAATCACGACCAGACTCCACCAGATTTAGGCAAAGAACAGAAAATACAAAGAATTGTAAAAGAAATACATGATATAGAAAAACAAATAGGGAACCCCTGCGAACAAAGTACATCAACAGAAAATAAGCCGCTAGAATATAATAGCCAGGAGATGAACAGTCACgggaaagtgactgttttatCATCTGTCAAATTGACGCCTGAAAACCAAGCTTTCTACAAAGTCCCTAACTGTGTACAACTTATTCCTATTGACAAAGATTACGATATATCGACAAAACATATTCAAAACACAGGTGAAGATTATATaccaaagaagaaaaaaataaaaactgaaaatattaCACCAGTTATAAAAACCTCCAATGAACCAATTCACGttgaaattgataaaaatgACGTGGAATGGGACGAAGTCAATATAACTGGTTTCAAGGAATATGATATTGGGCAAACAGTTCTTGTTCGATACTTCAAAAAAGCTTGGAAATATTACGTTGGCGTCATTGAAAATATTAGTTTAAACCCAAGAGAATACACCATAACGTATTACAAATCTATCGGTAAAAAAACTGACGTTAAATTTGTTAAACCTAAGCGTCAGGACCAAGATTGTGTTCCCGAATGTAATATAGTTAAGGAAATCGAACTTTTGGAGATAAATAAATGCCCTGTGAAATACATACTTGTGAACAGTGAAGACGcgatttacttttaa
- Protein Sequence
- MPRKYSRKTSRATSYTQEALEIAIKKIKNKELSYSAASRTFGIPTSTLSDRVLQKTALVSKTLGRSTAIPMELEKKLANSLRVMEKWGWGLSREEVLDVTEEFVKRNNLETPFNNGRPGPDWFISFRKRHNLSIKKPQPVEYLRKRMTDPFIIHEYFTLLETTLRELNINDPKRIWNLDETSVCFDPTKTKVVGGKGEPCTRTTYGNAKENVTVLTTVNAAGDKLDPLIVFKGKYMYKQWMLENPDEYDFQLTYAASKRGWMESDIFYNYMLNVVIPNLGEERPVLLLYDGHVSHVDDRVVALAVENHITIIKLPAHTSHLLQPLDLAVFKSFKAIWDKNLVKWQRQNIGVKLQKQGFSRMFAEAWKETKPKVIQNGFAKGGIYPFNANCIPKEKFDPKAYARWQTQMSQMIFKEPKALKQLCLDKINTNMSYNSHAAAQNCTDIHSETANSIQEGTSQPVNISFEELLLDKVTQHAQHKAPVKLKRFAKGSEVITKTFIEKQKEIELNKTSETQVQKTKKPIKKPVPQSEKHVADLVMPGPSGIQKTKLKKKKGKDFAPISDLIKPGPSGIQKTKLKKEKAKDVAPILTEMTNINNVKKDNVLESKPTKKGKGIGKKTRTDIENQTPKSYETCVDNNISYNTTDLTVPNELKMTKTLRDTKKYVSKNKKTFFTDVTAKKRKRASSASTITTIESIQMSVHSDSDLFDSISDILSDCSEWNKTDSVNHDQTPPDLGKEQKIQRIVKEIHDIEKQIGNPCEQSTSTENKPLEYNSQEMNSHGKVTVLSSVKLTPENQAFYKVPNCVQLIPIDKDYDISTKHIQNTGEDYIPKKKKIKTENITPVIKTSNEPIHVEIDKNDVEWDEVNITGFKEYDIGQTVLVRYFKKAWKYYVGVIENISLNPREYTITYYKSIGKKTDVKFVKPKRQDQDCVPECNIVKEIELLEINKCPVKYILVNSEDAIYF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -