Cros010915.1
Basic Information
- Insect
- Choristoneura rosaceana
- Gene Symbol
- -
- Assembly
- GCA_037349165.1
- Location
- JAZBNJ010000014.1:13609466-13614667[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 4.1e-11 6.9e-08 33.0 0.0 3 39 15 52 14 57 0.88
Sequence Information
- Coding Sequence
- atgCCACGATTTTACAAGCGGAAAACACAAGGGTATGAATTTGAAAAGCTAAAAAAGGCAGTAGAAGATGTAAGAAGCAGAAGATTTTCACTAGCCCAAGCATCCAACATTTATTCAGTGCCTCGATCGACAATATATGACCGTCTcaacaaaaaaattgtacatGAACCAAGACGTGGACAGAAATGTGTTTTCACCGAAGCCCAGGAAAAACAACTAGAAGAGCACATTTTAAACTGTAGCCAATTATTCAATATCCTCACAGCAAACGTCGTTCGAAAAATTGCCTTCAAATTTGCAAAAGCATACAATGTGAggaataattttgataaaatatcaaaaatggcTGGCAAAGATTGGTATTACGGATTTATGAAAAGACATCCTAATATTATAGTTGTATCAAACAGAAAATTAGAATCATCTGTGTATGGAGCTAAAGCTTTTAATGAAGCAGAGGTGTTAGAGTTTTACGATAATCAATTAGCTCAAGAAATAATTCACCACGTGGATAATACAGAAAGTCAAAACGATGACGGCAAAAATATGTCAGtgaataaaaagaaaagaaaattagACTTGGAACTGGCCAGTACACGTAGAAGAAGCACGGTTAGCCGAGATGATGACATTACGAATGGTCACACGATAACCCCAGAGCATTACgaaaacgaaaataataaatcagCACTGGATAAACTACAAATACATGTATTAAAGCAACTAGGCAGAAAACCTTACtcaggaataaaaaaagaaagcaaAGGTGAAGTATTTTGCAACGTCGAATCAGAGATAGAAGAAGCTTTGACTGCTGAAGTAGTCGAAAGTAGTGATCCTTTGGAAGCCTTAAGTGTTCCAGGTCCCTCAAGATATAACCTTTATCCAAGTTGTGGTAACACTGCTCAAGATAAAAACGTCTTTGTCTCATCAGAATCAGTTCAAGAGATGTCTTCATCTAAAGTTGCTAGAAAAGATCCACGTCTCCAACTAACGACATTATCTTCGATTTTGGACATTAAAGATGAATATAGTGTTCAATACCCTACAAGAATAGGAGAAGAGACTCTGGCTGATTTTGGGGTAGATTCTCAAGATGAAAGCGATACTTCAACAGACGATATAACTTTATCGCGTTTTCGCTCTAAAGCTGATATGAATTCAGATTCTTCAGTTTATTTTAAAGCTCAAAGTGAGAAGCGGAAACAAAAAGTTACTACGGAGTTATTGTTTCATAGATACAAATTGAAGTCTAACAGGGAGATAGACAGGTTACACAAAAAGATTAGGGAGCTTAAAGCGTCCGTGCAAAAGTATAAAAGGCAGGTTTATAAGCTGCAGCGACGATGTGATAATGTAATGGGTGAAAAGTGA
- Protein Sequence
- MPRFYKRKTQGYEFEKLKKAVEDVRSRRFSLAQASNIYSVPRSTIYDRLNKKIVHEPRRGQKCVFTEAQEKQLEEHILNCSQLFNILTANVVRKIAFKFAKAYNVRNNFDKISKMAGKDWYYGFMKRHPNIIVVSNRKLESSVYGAKAFNEAEVLEFYDNQLAQEIIHHVDNTESQNDDGKNMSVNKKKRKLDLELASTRRRSTVSRDDDITNGHTITPEHYENENNKSALDKLQIHVLKQLGRKPYSGIKKESKGEVFCNVESEIEEALTAEVVESSDPLEALSVPGPSRYNLYPSCGNTAQDKNVFVSSESVQEMSSSKVARKDPRLQLTTLSSILDIKDEYSVQYPTRIGEETLADFGVDSQDESDTSTDDITLSRFRSKADMNSDSSVYFKAQSEKRKQKVTTELLFHRYKLKSNREIDRLHKKIRELKASVQKYKRQVYKLQRRCDNVMGEK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -