Basic Information

Insect: Choristoneura rosaceana
Gene Symbol: ct
Assembly: GCA_037349165.1
Location: JAZBNJ010000018.1:1534127-1553097[-]

Transcription Factor Domain

TF Family: CUT
Domain: Homeobox|CUT
PFAM: PF02376
TF Group: Helix-turn-helix
Description: The CUT domain is a DNA-binding motif which can bind independently or in cooperation with the homeodomain, often found downstream of the CUT domain. Multiple copies of the CUT domain can exist in one protein (eg Swiss:P10180).
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 3 3.7e-27 4.3e-23 82.0 0.0 3 70 131 199 129 206 0.94

2 3 7.5e-32 8.8e-28 97.1 0.0 4 77 532 606 530 608 0.96

3 3 6.9e-31 8.2e-27 94.0 0.0 3 75 727 800 725 804 0.95

#	of	c-Evalue	i-Evalue	score	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	3	3.7e-27	4.3e-23	82.0	3	70	131	199	129	206	0.94
2	3	7.5e-32	8.8e-28	97.1	4	77	532	606	530	608	0.96
3	3	6.9e-31	8.2e-27	94.0	3	75	727	800	725	804	0.95

Sequence Information

Coding Sequence: ATGCTCCGTTCTATGGACCTTCGAGACGCGACGGAAAGAGCCGAACGCAAGCCCGAGCCGCTTCGGTCGCCCGCTGCGCCCGCGCCACGCGACGACGACGAGCGAGAGCGAAGCAGCGAACGACGCGAGACAGGTGGCGAGGACTGGCCGAGCACGCCGCCCCTCAACAACAACACGACACATCATAACAACAACCCTCCActgccgctgccgccgccgagCCCCTTTCGCTTCGAGGAGCACCGGCCGTACCGTTTCGCTGACGACATGGGTCCGTTACCCCCCGGCGCTCTCGTCGGGAGGCTCGGCGATTCCCTTATCCCCAAAGGAGACCCCATGGAAGCGAGATTGCAAGAAATGCTGCGGTACAACATGGACAAATACGCGAATACTAACCTAGACACGCTCCATATCAGCCGACGGGTGCGGGAGCTGCTGTCCGTCCACAATATAGGACAGAGGCTGTTCGCTAAGTACGTCCTTGGACTCTCCCAGGGGACCGTGTCGGAGCTCCTATCGAAACCCAAGCCTTGGGACAAACTCACGGAAAAGGGAAGAGACTCGTACCGGAAGATGCACGCCTGGGCCTGTGATGAGGCCGCTGTGATGCTGCTCAAGTCACTCATTCCTAAAAAAGTTGGTTCGAAGGAAGGCAACATGGGCCCAGGGTTCGGGCGAGGGGAGGGGGAGGGTGATGAGCGACTAGCCCACATCCTGACTGAAGCCTCCCACCTCATGAAGACCCCCAGCCAGCCGAACAATGATGACTCGAGGAGTAACGACGACTCAAACTCTCCCCGCACTCAGTGCCTCTCACCGTTCTCTAATAAGGACTCGAGTCAAAATAGAAGACTGAAAAAATACGAGAATGACGACATCCCCCAGGAGAAAGTGGTCCGCATTTACCAGGAGGAGCTCGCGAAGATCATGACACGGAGAGTGGACGACATGCGGCACAACCGCGATGGCTTCCCTGGAATGTTTCCACCTTTTTTCAGCGGAGGCATGCCCCCACACATGGAGCGACCGCCTGAGGACCTCCGGATGGCGCTAGAAGCATATCACAGGGAGCTCGCCAAGATCCAGCCTGGTGGGAACATCCCTAACCTCCACAATCTCCCAGGGATGCCGCCCTTCCCTAACCTCCTGGCTCTGCAGCAGCAAGCGATGCAGCAAGCTCAGAACCAGCACATAAACGGCTCTGGAGCAATCCAGGACCTTTCTCTTCCAAAAGACAAGAATGCCAAAATTAATGGTATAACTGATAGTGATAAAGACAAGCCAATGGATGCTGAGGAGGCTATAAGGCACGCGGGGAGCGCGTTTTCCCTAGTCAGGCCGAAGTTAGAACCGGGGCAGCAGTCAACAGGGTCTTCCGCGTCGAGCCCGCTTGGCAACGCTATCCTACCTCCCGCTATAACTCCCAACGAAGACTATAATAATTCAGCAGCAGCCAGTCCGCTGCAACGAATGGCTTCGATAACCAACAGTCTGATCTCTCAACCGACCAACCCGACCCATCATACGCCAGCTCAGCGCTCCATGAAAGCGGTCCTCCCCCCAATCACTCAACAGCAATTCGATCTCTTTAATAACTTAAATACCGAAGACATCGTCAGAAGAGTGAAGGAAGCACTAAGTCAATACTCCATCAGCCAAAGACTGTTCGGTGAATCCGTGCTAGGATTGTCGCAGGGGTCGGTGAGTGACCTGCTGGCGAGGCCGAAACCCTGGCATATGCTGACGCAGAAGGGGCGGGAACCCTTCATCAGGATGAAGATGTTCCTGGAAGACGACCACGCCGTCCACAAACTAGTGGCGTCGCAGTACAAAATCGCGCCGGAAAAATTGATGAGAACTGGAAACTATAGCGGAGCACCTCCATGTCCGCCAAACATGAACAAGCCGATGCCTCCGACGCAGAAGATGATCTCCGACGCGACTTCCCTCCTCAGCAAAATGCAGCAGGAGCAGCTGCTGGGCGGGCACGGGCACCTGGCGCACCTGGCGCCGCCCGCCGGCCTGCTGCTCACCCCGCCCGGCTTCCCCCCCCACCACGCCGTCACGCTGCCCCCCCTCGACGTCAAGGAGCGCAAGCCCCCCACGCATGCACCCCCCGCCATGCGTCCCCTCCACCAGCACATCTCCCCCAGCGTCTACGAGATGGCCGCGCTCACCCAAGACCTCGACACGCAGACCATCACGACCAAAATTAAGGAAGCGCTACTCGCCAACAACATCGGCCAGAAGATTTTCGGTGAAGCCGTGCTGGGACTGTCGCAGGGGTCCGTGAGCGAACTCCTCTCCAAACCCAAGCCCTGGCACATGCTCAGTATAAAAGGCCGGGAGCCGTTCATCCGCATGCAGCTGTGGTTGAGCGACGCGCACAACATCGACCGGCTGCAGGCGCTGAAGAACGAGCGGCGCGAGGCCAACAAGCGGCGGCGGTCCAGCGGGCCCGGCCAGGACAACTCCTCGGACACCTCCTCCAACGACACCTCCGAGTTCTACCACTCGAGCTCGCCCGGCCCGACCACTGGCGCGCCTTCCGCCAAGAAGCAGCGCGTGCTCTTCTCCGAGGAACAGAAGGAGGCCCTGCGACTCGCGTTCGCGCTGGACCCGTACCCCAACATGCCGACTATTGAATTCCTCGCGGCGGAGCTCGGGCTGTCGACGCGGACCATCACCAACTGGTTCCACAACCACCGCATGCGGCTGAAGCAGCAGGCGCCGCACGGGCTGCCGGCGGAGCCCCCGGCGCGCGAGGCGGCCGCGCCCTTCGACCCCGTGCAGTTCCGGCTGCTGCTCAACCAGCGCCTGCTCGAGCTGCAGAAGGAGCGCATGGGGCTGGCGGGCGTGCCGCTGCCCTACCCGCCCTACTTCGCCGCCAACTCCAACCTGGCAGCGCTGATCGGGCGCGGCCTCCTCCCGCCCGACGAGGCGAAGGACCAGGCCTCCGGCCTCGACCTCTCGATGCCGCTGAAGCGCGAGCCCGACGGCGACGACTTCGAGGACGACGACGTCGAGAGCAACCTCGGCTCCGAGGACTCGATGGACGACGGCGAGTCGAAGACGGAGCCGAAGGCGGCGTCGACGCCGGCGCGCTCCAGCCGGCGCAAGCCCGCCGCGCCGCAGTGGGTCAACCCCGACTGGCAGGACGAGAAGAAGCGGAACCCCGACGAGGTCATCATCAACGGGGTCTGCGTGATGCGGAGCGACGACTTCCGGCGGGAGGCGGAGGAAACGGTGCGCGTGGAGCCGTCTCCGGCGCGCGAGGCGTccccccccgcgcccgcgcgcACGCCGCTCTCCCCGCGCGCGCCGCTCACCCCCCCGGACGTCCTGCCCGACGACAAGATCAAGGCGGAGGCGGACGACGACCGATGGGAGTACTAG
Protein Sequence: MLRSMDLRDATERAERKPEPLRSPAAPAPRDDDERERSSERRETGGEDWPSTPPLNNNTTHHNNNPPLPLPPPSPFRFEEHRPYRFADDMGPLPPGALVGRLGDSLIPKGDPMEARLQEMLRYNMDKYANTNLDTLHISRRVRELLSVHNIGQRLFAKYVLGLSQGTVSELLSKPKPWDKLTEKGRDSYRKMHAWACDEAAVMLLKSLIPKKVGSKEGNMGPGFGRGEGEGDERLAHILTEASHLMKTPSQPNNDDSRSNDDSNSPRTQCLSPFSNKDSSQNRRLKKYENDDIPQEKVVRIYQEELAKIMTRRVDDMRHNRDGFPGMFPPFFSGGMPPHMERPPEDLRMALEAYHRELAKIQPGGNIPNLHNLPGMPPFPNLLALQQQAMQQAQNQHINGSGAIQDLSLPKDKNAKINGITDSDKDKPMDAEEAIRHAGSAFSLVRPKLEPGQQSTGSSASSPLGNAILPPAITPNEDYNNSAAASPLQRMASITNSLISQPTNPTHHTPAQRSMKAVLPPITQQQFDLFNNLNTEDIVRRVKEALSQYSISQRLFGESVLGLSQGSVSDLLARPKPWHMLTQKGREPFIRMKMFLEDDHAVHKLVASQYKIAPEKLMRTGNYSGAPPCPPNMNKPMPPTQKMISDATSLLSKMQQEQLLGGHGHLAHLAPPAGLLLTPPGFPPHHAVTLPPLDVKERKPPTHAPPAMRPLHQHISPSVYEMAALTQDLDTQTITTKIKEALLANNIGQKIFGEAVLGLSQGSVSELLSKPKPWHMLSIKGREPFIRMQLWLSDAHNIDRLQALKNERREANKRRRSSGPGQDNSSDTSSNDTSEFYHSSSPGPTTGAPSAKKQRVLFSEEQKEALRLAFALDPYPNMPTIEFLAAELGLSTRTITNWFHNHRMRLKQQAPHGLPAEPPAREAAAPFDPVQFRLLLNQRLLELQKERMGLAGVPLPYPPYFAANSNLAALIGRGLLPPDEAKDQASGLDLSMPLKREPDGDDFEDDDVESNLGSEDSMDDGESKTEPKAASTPARSSRRKPAAPQWVNPDWQDEKKRNPDEVIINGVCVMRSDDFRREAEETVRVEPSPAREASPPAPARTPLSPRAPLTPPDVLPDDKIKAEADDDRWEY

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01338275;
90% Identity: iTF_00680413;
80% Identity: iTF_00325269;