Ctib014767.1
Basic Information
- Insect
- Chorisops tibialis
- Gene Symbol
- -
- Assembly
- GCA_963669355.1
- Location
- OY770262.1:300147047-300155161[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 4 4.5e+02 3.0 0.0 8 20 234 246 233 246 0.88 2 11 0.00051 0.057 15.3 0.5 1 23 354 377 354 377 0.95 3 11 3.1 3.5e+02 3.4 2.6 2 23 382 404 381 404 0.95 4 11 0.0001 0.012 17.5 0.2 3 21 420 438 418 439 0.94 5 11 0.00075 0.085 14.7 0.7 1 21 449 469 449 470 0.95 6 11 4.4e-05 0.005 18.6 3.7 1 23 514 536 514 536 0.98 7 11 0.00051 0.058 15.3 1.1 1 21 544 564 544 565 0.95 8 11 0.017 1.9 10.5 0.9 1 23 580 602 580 602 0.92 9 11 1.7e-05 0.0019 19.9 1.8 1 23 608 630 608 630 0.98 10 11 5.5e-06 0.00062 21.5 1.2 1 23 636 659 636 659 0.96 11 11 4.9 5.6e+02 2.7 0.1 1 14 665 678 665 682 0.80
Sequence Information
- Coding Sequence
- atgccaTCGTTTTGTGTCGTTTCTAATTGTGAATACAAATACACTCATACCGACAATGTTTCATTCCACAAATTTCCCTACAACTCGCCTAGTGTCCTTGCCAAGTGGATTGAATTCACGGACCGCGGATCAAAATGGAAACCGTCCCGATGGAGTGCTATTTGCAGTCGACATTTCTTGCCTAGcgattttcgaaatttgatatcgCGTAAGTGCTTAAAAAAGAATGCAGTTCCTTCAGTCACAATAAAGCAATTTACTGGGAATTTCTTGGAGTTGCAACGCGATAAAGGTGGAATCGGGCTACAGatAACCGAAGAGCAATACGATTCAAATTGTCGACTATGCGGTATATGTTGCAAAAGTGTTGAAACATTCGCCACGAATTTTGAAGTATTCGGAATGATTCAGAAATGCTTTCCAACATTAAACATTCAGCAGGACGATGACTTACCGAAAAATCTCTGCTCAACGTGTCTCGATCGATTACACACATTCTCAGACTTTGTTGACGAAGTTCTGAAAACTCAAAAAGACTTAGAATTGAAATTCACGAACGAACAGAACGAACTGCATACTCCCGATATAGGAAAATCATTGAAAATCAAGCAGGAACCGATCATCAAAGTAAAGCAAGAAATCAATGAAGGATTTCAGAATTCGTTGAACGAAGACTATGAAAACGAATTGCACGAAGATGAAGAATTCGAACAAAAATCTCAACTACAAAGTCACTTACCCATTATAAATTCAcaagaaataattaataattgtgatataatggaaataatatcacTGGATGATGCATTCATCGATATTCCAGACGATGAGGTCGGCGAAAATGAATCGGAAAAtccgaaaatttcaaattatgttcGACTCGGTGAGCATAACTATGCAAAAGCTATCGATACTAAACCGATACCCATAATGCAGGCATCTTATAAAATGGAAGCAATCGAAGAGTCcgattcgaaatttcatttcgCAACAAAACTACCCAATATCGTTGTAATCGATGAAAGCATTGTGAAATCGGGACAAAGTTTTGGCGACTGTTTTCAATGTGGCGATTGTACAATGAGATTCCCGTACGAGTCGGATCTAACTgaacataaaaatttaaatcatagTTCATCGAAACGCTGTGCATCGTGCAATTTAGAATTCAATTCGTTCTATAAGTTTCTGCTGCACAAGAATAAATTTCATAAATCGACGAAAAAACGTTAtgtgaaaatgaaaactaatgtAAACTGTCCGATGTGTGATAAAGTTTTCAGTAGTAAGCTGGCATTGAATAatcatcgaaaatatatttGCGATTATCAACAAGATCAGGAATACGAATGTAAGCATTGTGGAACGAAATTGAATCGTTGGATTTTATTCAGACGTCACGAACGTATTTGCAAAAAGACAATTAAGATTGACGTCAATCCGGTTGACGATCTTCAATCGACTGTATTCGTCCCAACAGCCTCAGTCACCACAAATCGATCGCAATTGCCTAAAATCGAACCCAACGAGAAAGGACAATTCGTTTGTACAGTTTGCAGCCGTACATATTCCCGACGCCATAATCTCTTCAAACACGAAATAACACATCGACCGCAAGATCTCTGGAATCATAAGTGCGGTGATTGCGAAAAACTTTTCGATCGCATGTACGATTTACGACGACACCTAAAAAGCGAAGAATGCTCGAAAAATAGTCAAAAGCCTCAACAGATTTTCTTCATTTGTACGATATGCGGTAAACAGCTTAAATCACTGCAACGCCTAAAACAACACAGTACTTTGCATTCGGGCAAAAAACCGTACGTATGTGAATCATGCGGAAAATCTTTTacaaatgttaataatttatatCAGCATCATATCACGCATTCGGATGTGCGGCGTTATAAATGTGATATGTGCGAAAAAGTGTTTAAAAGGCGCGGCGGTCTGAATCAACATAAACGAGCGTatcatttcaaaattaaacCGCACGAGTGTCCGACATGTAAACATCGTTATGCACTAAAAGGTGATATGGTAAGATGTAAACATTCATTATTGAgacaataa
- Protein Sequence
- MPSFCVVSNCEYKYTHTDNVSFHKFPYNSPSVLAKWIEFTDRGSKWKPSRWSAICSRHFLPSDFRNLISRKCLKKNAVPSVTIKQFTGNFLELQRDKGGIGLQITEEQYDSNCRLCGICCKSVETFATNFEVFGMIQKCFPTLNIQQDDDLPKNLCSTCLDRLHTFSDFVDEVLKTQKDLELKFTNEQNELHTPDIGKSLKIKQEPIIKVKQEINEGFQNSLNEDYENELHEDEEFEQKSQLQSHLPIINSQEIINNCDIMEIISLDDAFIDIPDDEVGENESENPKISNYVRLGEHNYAKAIDTKPIPIMQASYKMEAIEESDSKFHFATKLPNIVVIDESIVKSGQSFGDCFQCGDCTMRFPYESDLTEHKNLNHSSSKRCASCNLEFNSFYKFLLHKNKFHKSTKKRYVKMKTNVNCPMCDKVFSSKLALNNHRKYICDYQQDQEYECKHCGTKLNRWILFRRHERICKKTIKIDVNPVDDLQSTVFVPTASVTTNRSQLPKIEPNEKGQFVCTVCSRTYSRRHNLFKHEITHRPQDLWNHKCGDCEKLFDRMYDLRRHLKSEECSKNSQKPQQIFFICTICGKQLKSLQRLKQHSTLHSGKKPYVCESCGKSFTNVNNLYQHHITHSDVRRYKCDMCEKVFKRRGGLNQHKRAYHFKIKPHECPTCKHRYALKGDMVRCKHSLLRQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -