Ctib032829.1
Basic Information
- Insect
- Chorisops tibialis
- Gene Symbol
- ZFY
- Assembly
- GCA_963669355.1
- Location
- OY770264.1:13788181-13806363[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.24 27 6.9 1.9 1 23 37 60 37 60 0.95 2 13 1.1 1.2e+02 4.8 0.4 2 23 205 227 204 227 0.93 3 13 8.7e-06 0.00098 20.8 0.6 1 20 340 359 340 362 0.93 4 13 0.3 34 6.6 4.4 1 23 368 391 368 391 0.98 5 13 0.00017 0.019 16.8 2.9 1 20 405 424 405 427 0.93 6 13 0.62 70 5.6 4.6 1 23 433 456 433 456 0.97 7 13 1.3e-05 0.0014 20.3 2.6 2 23 471 492 470 492 0.97 8 13 0.069 7.8 8.6 2.3 1 23 498 521 498 521 0.97 9 13 0.00024 0.027 16.3 1.9 1 23 535 557 535 557 0.98 10 13 0.016 1.8 10.6 1.8 1 23 563 586 563 586 0.95 11 13 3.5e-06 0.00039 22.1 2.3 1 23 600 622 600 622 0.98 12 13 0.00037 0.041 15.7 3.7 1 23 628 651 628 651 0.97 13 13 6.6e-07 7.4e-05 24.4 1.1 1 23 665 687 665 687 0.99
Sequence Information
- Coding Sequence
- ATGtcgtcaaattttcaagttgtcgAAGAAGAATGTGTCCTAGATTTTCATGTGACTTTTAAATCAGAACCCGAGCTGGATATTGGCATAGATTGCTATGGCGAGCAATTTAAGTGCTCGgcttgtttaaaacattttcaatCGCGTGATATGTTCCGCGGTCACATAGTATCTGATCATTTAGAAGAAAACATTTGCAAACTTTGCAATGAAGAATTTGAATGTAGTCAACTCGAACATTCGACCAAACATCTCCCATTTAGCCACTTGGTTGCAATCGAACCGGATAATACATCTGACTCAATTGAAGAGTCACTAAGACAAACTGAAAAAGTGCAAATGACAGCAATACACAAAGACGAATACCGTTTAGTAAATCATATGTGTACTCATCCCGGTGAAAACGCTTTTGGCTGTGAATTATGTCTGAACAAGTCTGGAAGTAGTAGCGCATTGCTATGCCATAGACGAAGCAATCAAAATGAGGAAGAATTCAGCGAAATAtcgtcaaattttcaagttgccgAAGAAGATTGTGTCGCGGATTTTCATGTGACTTTTAAATCAGAACCCGAGTTGGATATTGGCATAGATTCCTATGATGAGCAATTGAAGTGCTCGGCTTGTTTAAAACAGTTTCAATCGCTTGATACGTTTCGCGGTCACATAGTATCTGATCATTTAGAAGAAAACATTTGCAAACTTTGCAACGAAGAATTTGAATGCAGTCAATTCGAACATTCGGCCAAACATCTCCCATTTAGCCATTTGGTTTCAATCGAACCGACTAATCCGTCTGACACAAACGAAGAGTCAATAAGACAAACTGAAAATGCGCAAATGACAGCAATACACAAAGACGAATACCGTTCAGTAAATCATATGTGTACTCATCCCGGTGAAAACACACTTAACTGTGAATTGTGTCTGGAAAAGTCTGGAAATAGTGCATTGCTATGCCATAGACGAAGTAAGGGCAGAGATGAATTGATTAGTAATGACAAACAAGTACCCCATTTCCAATGCGGTGTTTGCTCCaaaattttcagtaaaaaatcTCTACTAAGAAGGCATATGCCTGTGCATACtggtgaaaaaccgtttcaatgtGAATTATGTCCAGCAAAGTTTGGACACAGCAACACGCTGCTATGtcatagacgaactaagcacacagatgaaTTGATTAGTAAGGACGAATTAGTACCCCACttccaatgcagtgtttgcaCCAAAATTTTCAGTAAGAAATGCCTATTAAGAAGGCATATGCCTGTGCATACTGGTGAAAGACCGTTTCAATGTGAATTATGTCCGGCAAAGTTTGGACACAGTAACACGCTACTATGCCATAaacgaactaagcacacagatcAATTGATTACTAAGGATAAATCAGTACCAGGCCTTCAATGCAGTATTTGCAACAAAGTTTGCGGTcgaaaatacaaattaaaagaacatatgcgtgtgcataccggtgaaaaaccgtttcaatgtGAATCATGTCccgaaaagtttggaaacagtaCCTCGCTGCTATGCCATAGGCGAGTTAAGCACGCAGATGAATTCATTAGTGCTTCTAAACCAGTACCAGACTTCCAATGCGctatttgctacaaagttttcggTATGAAATGTCTATTAAAAAGTCATATGCGTGCTCATACTGGCGAAAAACCATTTGACTGTGAACTATGTCCGGAAAAGTTTAGAGATAAAACCGCTCTGCTATGCCATAGACGAGTTAAGCATACAGATGAATTGATTAGTGATGACAAACCTGTACCAGACTTTCAATGCAatgtttgcaacaaagtttttGGTCAAAAATACAAATTAATAAACCATATGCACGTGCATACCGGTGAGAAACCGTTTAACTGTGATTTATGTCCAGCAAAGTTTAGTCACAGTAAGACGTTGCTAAGGCATAAGCGAACTAAGCACGCAGATGAATTGATTAGTGATGATAAACCAGTACCAGACTTCCAATGCAatgtttgcaacaaagttttcggtgtgaaattccaattaaaaaatcatatgcgtgtgcataccggtgaaaaaccgttaCAATgtatcggcgtattactatcatccGATCAGATGCtcttgtgtttctgcttcagtggttcgagcTTATTACCGGCGACTATACACGCAGACGATGAGAGTTCTTTGGCATTGTCAGAGGCGGTGCCACGAACCGATCTTCCCGAACCAAGCGGGGATGAACGTTTTGAACAACTTCGACATTTGCCACTAACGGTTACAAACTGGGAGTAG
- Protein Sequence
- MSSNFQVVEEECVLDFHVTFKSEPELDIGIDCYGEQFKCSACLKHFQSRDMFRGHIVSDHLEENICKLCNEEFECSQLEHSTKHLPFSHLVAIEPDNTSDSIEESLRQTEKVQMTAIHKDEYRLVNHMCTHPGENAFGCELCLNKSGSSSALLCHRRSNQNEEEFSEISSNFQVAEEDCVADFHVTFKSEPELDIGIDSYDEQLKCSACLKQFQSLDTFRGHIVSDHLEENICKLCNEEFECSQFEHSAKHLPFSHLVSIEPTNPSDTNEESIRQTENAQMTAIHKDEYRSVNHMCTHPGENTLNCELCLEKSGNSALLCHRRSKGRDELISNDKQVPHFQCGVCSKIFSKKSLLRRHMPVHTGEKPFQCELCPAKFGHSNTLLCHRRTKHTDELISKDELVPHFQCSVCTKIFSKKCLLRRHMPVHTGERPFQCELCPAKFGHSNTLLCHKRTKHTDQLITKDKSVPGLQCSICNKVCGRKYKLKEHMRVHTGEKPFQCESCPEKFGNSTSLLCHRRVKHADEFISASKPVPDFQCAICYKVFGMKCLLKSHMRAHTGEKPFDCELCPEKFRDKTALLCHRRVKHTDELISDDKPVPDFQCNVCNKVFGQKYKLINHMHVHTGEKPFNCDLCPAKFSHSKTLLRHKRTKHADELISDDKPVPDFQCNVCNKVFGVKFQLKNHMRVHTGEKPLQCIGVLLSSDQMLLCFCFSGSSLLPATIHADDESSLALSEAVPRTDLPEPSGDERFEQLRHLPLTVTNWE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -