Ctib009560.1
Basic Information
- Insect
- Chorisops tibialis
- Gene Symbol
- -
- Assembly
- GCA_963669355.1
- Location
- OY770262.1:201746999-201748549[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.23 26 6.9 5.4 2 23 22 44 21 44 0.90 2 13 0.00022 0.025 16.4 2.5 1 23 52 74 52 74 0.98 3 13 0.0029 0.32 12.9 0.0 1 23 80 103 80 103 0.97 4 13 1.6 1.8e+02 4.2 3.5 1 23 109 132 109 132 0.95 5 13 2.8e-06 0.00032 22.4 0.5 1 23 164 187 164 187 0.97 6 13 0.0034 0.38 12.7 4.3 1 23 195 218 195 218 0.97 7 13 0.0043 0.48 12.4 0.3 2 23 224 245 223 245 0.97 8 13 6e-05 0.0067 18.2 0.3 2 23 252 274 251 274 0.95 9 13 1.1e-05 0.0013 20.5 1.6 1 23 283 305 283 305 0.99 10 13 4.4 5e+02 2.9 2.9 1 23 311 334 311 334 0.94 11 13 0.068 7.7 8.6 0.5 2 23 371 393 370 393 0.95 12 13 0.022 2.5 10.1 8.2 1 23 402 424 402 424 0.98 13 13 0.035 3.9 9.5 2.4 1 21 430 450 430 453 0.95
Sequence Information
- Coding Sequence
- ATGCATGGCTGTGCACCTTTGCAATGCGCACAAATGGTCGCATCCCCGAAAGGAAAATTTTGGAAATGCGAAATTTGCTTGCATTGCTACGTGCAAGAAAGTGATTTGTACAAACACTTGTACTTTTGTCATTCGGAACCGACTCATACTGGTTACAAGTGCGAGACATGCTCGAAATTATTTCGATATAAAAGAAGTCTAATGGCGCACGAAAAAAGTCACAAGGCTGTGAAACCATTTCAGTGTGCGATTTGTTTAGAAAGGTTCGAGGAGAAAGACGACTTGAGCGATCATGCGCGTATAGTTCATCCAAACAATCGATCGCATAAATGCGAAATGTGCCGGGAAGTATTTTTGTGCAGAGACAGGTTGCGAGCTCATATAAGAGTGAAACATGTGCTCCTGTGTTGTGATGAATCAGCACCAGAAATTTGCCGAAGCGAATTGAATTTGAATGAGTATCGAAAAACACATTTAGGAAAAGTGCGTTATAACTGCGGTAATTGCGACAAAACATATTCGAATAAATACGCCTTACTGGAACATATACGCGTGTATCATTCAGGACCGAAACCGAACAAACACCAATGCGATCAATGTCCACAATCGTTTCTCAAACATAATAATTTACAACGTCATGTACGAGTCTTTCACACGGGAGTAGGAATAAAATGCGATATATGCTCAAAGCCGTTCGGGTCCGAACAACGAAAAGCGATACATATGAGAACTCATACTGGCGAAAGGCCGATTGAGTGTAAGATTTGTTTTAAATCGCTGCGCTATGAGAGTAATTTAAAGGACCACATGATAGTAATGCATCCGGAACTATCGGATGCGACTGGTTACAAGTGtgaaatttgctcgaaaatctgtCCGACGAAAAGTAAATTGGCTAGGCATGAACGAATACATAAATCGGAAAAACCATTTCAGTGCGACCTTTGCGATGTACGGCATAAACACAGCGGCGGTATTAGAATACACAAGCGTTTGAAGCACGGCATCATTGAAGTTAAAGGTTCACGTTTGCAAATACCCGAAACGGTGGAGGTGCCatcggaaaaagaaaaaaaaggagcgAATAAAACGACTAGTCTTGAACCGATTCAATGTAAGTTTTGTCCGAAAACGCTgcagaataaaaaaattttaaggactCATGTGATGGTTGTCCATCCGGAATCGTCAAATTCGATTGGTCACACATGTgatatttgctcgaaaatctgcGGAACAAAACACAAATTGAAAGAGCATAAAAGGAGACATTTTTCGGAGAAACCATTTGAATGCGATATTTGCGGCGATCGGTTCAAATACAGACCCAATGTTAGAGCCCATAAACGTTGTAAGCATGGCATCATTGAACCTAAAGGTTCGCTATCACGGTTACGAGAAACGGTAGAGCCGCCACCGCAAAATGGACAACCTACTGAAATGATGGAGAACTTTGTCATTGACCTGCCGCCAAATGAATCCATGGAGATGCCAATCACTGAATCACAAATTGAACTCGATTTAACGGATATGATGGAAATATCTGTTTGA
- Protein Sequence
- MHGCAPLQCAQMVASPKGKFWKCEICLHCYVQESDLYKHLYFCHSEPTHTGYKCETCSKLFRYKRSLMAHEKSHKAVKPFQCAICLERFEEKDDLSDHARIVHPNNRSHKCEMCREVFLCRDRLRAHIRVKHVLLCCDESAPEICRSELNLNEYRKTHLGKVRYNCGNCDKTYSNKYALLEHIRVYHSGPKPNKHQCDQCPQSFLKHNNLQRHVRVFHTGVGIKCDICSKPFGSEQRKAIHMRTHTGERPIECKICFKSLRYESNLKDHMIVMHPELSDATGYKCEICSKICPTKSKLARHERIHKSEKPFQCDLCDVRHKHSGGIRIHKRLKHGIIEVKGSRLQIPETVEVPSEKEKKGANKTTSLEPIQCKFCPKTLQNKKILRTHVMVVHPESSNSIGHTCDICSKICGTKHKLKEHKRRHFSEKPFECDICGDRFKYRPNVRAHKRCKHGIIEPKGSLSRLRETVEPPPQNGQPTEMMENFVIDLPPNESMEMPITESQIELDLTDMMEISV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -