Basic Information

Insect: Chorisops tibialis
Gene Symbol: -
Assembly: GCA_963669355.1
Location: OY770262.1:332322642-332324562[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 0.032 3.5 9.6 0.4 2 23 175 197 174 197 0.96

2 10 0.19 22 7.2 1.7 1 23 257 281 257 281 0.94

3 10 0.54 61 5.8 0.1 2 23 290 312 289 312 0.94

4 10 0.00035 0.04 15.8 1.5 1 23 318 341 318 341 0.97

5 10 9.7e-05 0.011 17.5 0.6 1 23 351 373 351 373 0.99

6 10 9.5e-05 0.011 17.6 1.5 1 23 379 402 379 402 0.96

7 10 2.7e-06 0.00031 22.4 2.4 1 23 410 432 410 432 0.99

8 10 0.0015 0.17 13.8 4.9 1 23 438 461 438 461 0.97

9 10 0.00088 0.1 14.5 0.4 2 23 473 494 472 494 0.92

10 10 3.4e-06 0.00038 22.1 0.9 1 23 500 523 500 523 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	0.032	3.5	9.6	0.4	2	23	175	197	174	197	0.96
2	10	0.19	22	7.2	1.7	1	23	257	281	257	281	0.94
3	10	0.54	61	5.8	0.1	2	23	290	312	289	312	0.94
4	10	0.00035	0.04	15.8	1.5	1	23	318	341	318	341	0.97
5	10	9.7e-05	0.011	17.5	0.6	1	23	351	373	351	373	0.99
6	10	9.5e-05	0.011	17.6	1.5	1	23	379	402	379	402	0.96
7	10	2.7e-06	0.00031	22.4	2.4	1	23	410	432	410	432	0.99
8	10	0.0015	0.17	13.8	4.9	1	23	438	461	438	461	0.97
9	10	0.00088	0.1	14.5	0.4	2	23	473	494	472	494	0.92
10	10	3.4e-06	0.00038	22.1	0.9	1	23	500	523	500	523	0.97

Sequence Information

Coding Sequence: ATGATTAATAAGAACTTGTGCAGAGCATGTCTATCAGCCGATGGAGAAATGTGCCCTCTCTTCAACGATAATACGGAAATGTTGAAAACAGGATTACACACCATCGCGGACGTTTTGAATGCTTTTACTTCTGTTTTGATCGATACCAACGACAATTTACCGGATCATATTTGTCTCGAATGCTATGACGAAGTCCAACGAGCGTATACATTCAAACTGAAATGTGAAAAATCCGATATGATTCTGCATCAATTGAAAGAAGGAAAAGTGAATTTAAGAAAACTGAAAGATATCGATTGCGAAAGAATTCAAAACTTGATAGTGGATTGTAAACCAGAAGAGGTCCTGAGTCTTTATAATGATGCAAGTGAAACGGATAAAATACCGCAGAATACACAGATTGTGAACAAGGACTATGATGAAACTGCTTTCCATGTAACCGTTAAAACCGAGCCTGACTTGGACATCAGTTTCAATGATGAATCGATCGATTATAGCGAGAGCGAATCCAATGAAGAATTGAAGTGTTCGGCTTGTTCGAACGCGTTCGAATCGCTTGATACATTCCGCCAGCATATTATTACCAAGCACATAGAAGAAAACCTGTGTAGACTGTGCAATAAAGAATTCGAATGCAGTCAATATGAACACACAACTAAGCACCTTCCGCCCAGCTATTCAAATGAAACCACGAACGAAAACTCTTCGGAATCGGGCAAAGATTCAGTGAAAGCTTCTGAACCGAAACTTGTTAGCGGTCAGGCTCGGTTCGCATGTACGATTTGTCCAAATGTGAGCTATAAAACACAAACATGCCTAGCTCGGCACAAGGAAAAGATGCACAACGATGATGTTTACAAGTGGATAAAGTGTCGTCTGTGTTCGATAATGGTACCAAACGAAAAAGAATATTTAACGCACATGATAAATGAACATAATTGCCAAAAACCATTCAAGTGTGAATACTGTGGCTTACTGTATCGACAGCAAATGACATTGAGATATCATTTACGAGCCaaacatagcaatgaaattgcGGCGGTAAACGTATTTCAGTGTGAAATATGTTCGAAAATCTTACCATATAAATCAAGATATATCGTGCATATGAGAACGCATACAGGCGAATCACCGCATCAATGTAAGATATGCTCGGAAAAATTCATTCGAGTCGATACGCTAAAGGCGCATATTGAAAAGAAACATACGGCTCCCGATAATCCGAACTATAAATGTAAAATATGTTCGAAAGTTTTCGGTTATAGCAACCACTTGACCAGTCATATGCTTATTCATACTGGCGAAAAACCATACGATTGTAAAATATGCTCCGAGAAATTTCGATGtgcgaaatatttgaaaaaccATATGCGAACGAAACACACCGATAAAGTATATGACGGCAAGCCTGTTACTCAATGTATCGTTTGCTCGagagttttcggttttaattaCGAATTAATCAGGCATATGCGGTTGCACACCGATGAGCGGCCTTTCAAATGCGAACTTTGCTCGAAAGCATTTCGACAGAAAGAGAATTTAAATGGACATATTTTACGGTATCATAATAATGACGTAAACTAA
Protein Sequence: MINKNLCRACLSADGEMCPLFNDNTEMLKTGLHTIADVLNAFTSVLIDTNDNLPDHICLECYDEVQRAYTFKLKCEKSDMILHQLKEGKVNLRKLKDIDCERIQNLIVDCKPEEVLSLYNDASETDKIPQNTQIVNKDYDETAFHVTVKTEPDLDISFNDESIDYSESESNEELKCSACSNAFESLDTFRQHIITKHIEENLCRLCNKEFECSQYEHTTKHLPPSYSNETTNENSSESGKDSVKASEPKLVSGQARFACTICPNVSYKTQTCLARHKEKMHNDDVYKWIKCRLCSIMVPNEKEYLTHMINEHNCQKPFKCEYCGLLYRQQMTLRYHLRAKHSNEIAAVNVFQCEICSKILPYKSRYIVHMRTHTGESPHQCKICSEKFIRVDTLKAHIEKKHTAPDNPNYKCKICSKVFGYSNHLTSHMLIHTGEKPYDCKICSEKFRCAKYLKNHMRTKHTDKVYDGKPVTQCIVCSRVFGFNYELIRHMRLHTDERPFKCELCSKAFRQKENLNGHILRYHNNDVN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -