Ctib041617.1
Basic Information
- Insect
- Chorisops tibialis
- Gene Symbol
- -
- Assembly
- GCA_963669355.1
- Location
- OY770264.1:182343441-182345144[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.13 14 7.8 0.6 1 23 106 128 106 128 0.95 2 11 6.2e-05 0.007 18.1 1.9 1 23 134 157 134 157 0.96 3 11 0.00016 0.018 16.9 3.6 1 23 172 194 172 194 0.98 4 11 1.3e-05 0.0015 20.3 2.2 1 23 200 223 200 223 0.96 5 11 0.00034 0.038 15.8 2.6 1 23 237 260 237 260 0.93 6 11 3.9e-05 0.0044 18.8 1.5 1 23 266 289 266 289 0.94 7 11 2.9 3.3e+02 3.5 0.3 1 23 393 415 393 415 0.91 8 11 7.7e-05 0.0086 17.9 5.0 1 23 421 444 421 444 0.96 9 11 0.00068 0.076 14.9 6.1 1 23 474 497 474 497 0.96 10 11 0.059 6.6 8.8 1.0 1 23 505 527 505 527 0.94 11 11 0.0006 0.068 15.0 3.0 1 23 533 556 533 556 0.96
Sequence Information
- Coding Sequence
- ATGCAGTTGCAGATGGACTATGTGCCCCACGTAGAGATCAGCGAGACAAGAACTACTTTGCAAAATTATTTGGAGACAGCTGTACCAATGAAACGGTTGAGGAAGACCCAGTCGCTCGACGAAAATGTTTTGCAATTGAGTAAAACCATTGCCCCCGAAAAAGTGCTGACCACAGAAGCAGAGTTGCAGTTGAAGGATAAGCAGCAGGAAGACAACCAATTTCGCAgagatgaaatggaaaacgaCGATGCAGTAAGTTTTGCAATCAAAACTTTTCCGCCCATGGAAGAAACACCGAGCGTTTGGTTACAAACTTATGTGTGCGACATATGCAGCAGAGAGTTTGAATGGAAAATTTGCCTCGAGGTGCACAAGGCAAGACACACAACTGAGAGACCATTTGTGTGCAAATATTGCCCTACGAACTACAAATCGAAGAGGGCATTGAATCAACACATCAAACAGAAACACCTGCAGGAGGGCAATCAATTGCACAGAGAGGATGAGCAAACTTTTGTGTGCGACATATGCAACAGAAAGTTTAAGTGGAAAAGTCACCTCGAGCGGCACAAGCTAAGACACACAACTGAGAGACCATTTGTGTGCAAATATTGCCCTAAGAACTACAAATCGAAGAGGGCATTGAATCAACACATCAAACAGAAACACCTGCAGGAGGGCAATCAATTGCAGACAGAGGAGCAAACTTTTGTGTGCGACATATGCAACAGAACGTTTAAGTGGAAAAGTCACCTCGAGAAGCACAACAAGGCAAGACACACAACTGAGAGACCATTTGTGTGCAAATATTGCCCTAAGAACTACAAAACGAAGTACGGCTTGAATCAACACGTCATACAAAAACACCTGCAGGAGGGCAATCTGCCCCACGGAGAGATCAGCGAGACAAGAACTACTTTGCAAAATTATTTGGAGACAGCTGTACCAACGAAACGGTTGAGGAGGACCCAGTCGCTCGAAGAAAATGTTTTGCAAGTGAGTAAACCCATTGCCCCCGAAAAAGTTCTGACCACAGAAGCAGAGGTGCAGTTGAAGGATAAGCAGCAGGAAGACAATCAATTTCGCAGAGAGGAAATGGAAAACGACGATGCAGTAAGTTTCGCAATCAAAACTTTTCCGCCCATGGAAGAAACACCGAGCGTTTGGTTACAAACTTATGTGTGCGACATATGCAGCGGAGAGTTTGAATGGAAAATTTGTCTCGAGGTGCACAAGGCAAGACACACAACTGAGAGACCATTTGTGTGCAAATATTGCCCTAAGAACTACAAATCGAAACGCCACTTGAATCAACACGTCAAACAGAAACACCTGCAGGAGGGCAATCAATTGCAGAGAGAGGATGAGCAAACTTTTGTGTGCGACCTCGAGCGGCACAAGGCAAGACACGCAAGACCATTTGTGTGCAAATATTGCCCTAAGAACTACGAATCGAAACGCCACTTGAATCAACACGTCAAACATAAACACCTGCAGGAGGATGAGCAAACTTTTCTGTGCGACATATGCAACAGAACGATTAAGTGGAAAAGTTACCTCCAGACGCACAAGGCAAGACACGCAACTGAGAGACCATTTGTGTGCAAATTTTGCCCTAAGAACTACAAAACAAAGGGCGACTTGAGTGAGCACGTCAAACATAAGCACGGAACCAAAACCAAatcgaactatttttttttttaa
- Protein Sequence
- MQLQMDYVPHVEISETRTTLQNYLETAVPMKRLRKTQSLDENVLQLSKTIAPEKVLTTEAELQLKDKQQEDNQFRRDEMENDDAVSFAIKTFPPMEETPSVWLQTYVCDICSREFEWKICLEVHKARHTTERPFVCKYCPTNYKSKRALNQHIKQKHLQEGNQLHREDEQTFVCDICNRKFKWKSHLERHKLRHTTERPFVCKYCPKNYKSKRALNQHIKQKHLQEGNQLQTEEQTFVCDICNRTFKWKSHLEKHNKARHTTERPFVCKYCPKNYKTKYGLNQHVIQKHLQEGNLPHGEISETRTTLQNYLETAVPTKRLRRTQSLEENVLQVSKPIAPEKVLTTEAEVQLKDKQQEDNQFRREEMENDDAVSFAIKTFPPMEETPSVWLQTYVCDICSGEFEWKICLEVHKARHTTERPFVCKYCPKNYKSKRHLNQHVKQKHLQEGNQLQREDEQTFVCDLERHKARHARPFVCKYCPKNYESKRHLNQHVKHKHLQEDEQTFLCDICNRTIKWKSYLQTHKARHATERPFVCKFCPKNYKTKGDLSEHVKHKHGTKTKSNYFFF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -