Ctib002244.1
Basic Information
- Insect
- Chorisops tibialis
- Gene Symbol
- -
- Assembly
- GCA_963669355.1
- Location
- OY770262.1:47541246-47545450[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 16 0.0023 0.26 13.2 0.6 1 21 272 292 272 293 0.95 2 16 0.015 1.7 10.6 0.2 3 23 302 323 300 323 0.93 3 16 0.0023 0.26 13.2 0.9 3 23 331 352 330 352 0.95 4 16 0.002 0.23 13.4 3.7 2 23 359 381 358 381 0.96 5 16 0.004 0.45 12.5 2.4 1 23 386 408 386 408 0.98 6 16 0.022 2.4 10.2 0.4 2 23 413 434 412 434 0.97 7 16 2.2 2.4e+02 3.9 0.8 8 23 437 452 436 452 0.93 8 16 0.022 2.4 10.2 0.4 2 23 457 478 456 478 0.97 9 16 0.003 0.34 12.8 2.2 3 23 486 506 484 506 0.93 10 16 0.31 35 6.5 4.2 1 23 512 535 512 535 0.97 11 16 0.38 43 6.2 0.4 1 16 540 554 540 562 0.77 12 16 0.15 17 7.5 0.4 1 23 578 600 578 600 0.89 13 16 1.3e-05 0.0015 20.3 2.2 1 23 606 629 606 629 0.97 14 16 0.033 3.8 9.6 0.2 1 23 635 657 635 657 0.97 15 16 0.00014 0.016 17.0 1.5 1 23 663 685 663 685 0.98 16 16 0.0015 0.17 13.8 0.4 1 23 691 713 691 713 0.96
Sequence Information
- Coding Sequence
- ATGGACAGCAAATTGCTGAAAGAAACAACATGTCGAATGTGCATGGCACTATCCGAGAACTTCAAGGAATTCACTCCGATCAGTGAAGTTCGAACTTCACGCGTTGAAATCTTCGAGGAAATCACTTCGTTCAATTTGGAAGTAAACGAAAACGATGGACTTCCGCAACTCATTTGTCCGAAATGTATCGAGGAATTCGATTCGGTTATTCAGTTCCGTAAGCGTTGCTTGGAAGTGCAGACCGAGCTGCGAACCTACTTTGAAGAAAACCCGGCCGTTGATGATGACGAGAACGGCGACGAACTGGACAACAATCAGGAGGAGATTATCGACGAGGAGCAAGAAGAGGCGTACCAAATCGATTCCGAAAACAAAAGTGATTCGATGGAGACTGTTTTGGGAACGAAATACGACGTTTCggaagaagaagatgaaaacTGGGAATGCGAGTACTACATTGGGTCTGATGAAGAGCTGGATTTTCTGAATGCCTGCTCAACTGCATCGAAAAGAGTTGGCAAACAGAAAGAAAAAGCTTCAAAAGCCGAAGAAACGCAATCAACAAACATTATCGACTCCAAAGAACTTGGAAGCCATCCGAGCAGCAATGAAAACCGAGAAAAGGAAACTGCAAATGACGAAGAGGATAATCAGTACTATGCAGAAGACGAGATGATTGAAGTTAGTTTCGAAATGGATTTGAGCAGTGAGGATAATTTAAACGGGAACGTCGATTATAATGATATCTACAACACATTAAACAGTGAACATCATGAAAAGCTTCCTGAAAAATGTAACAAAGAAACAAAGAGATATAACTGCAAATATTGTGACCAGGGATTTGAATTTGTGAGTCTATTAAatagtcatttaaaaaaatgcccGAAACGGAATACAGTAAATTGCGATATTTGTACAGTTGAATTCGAGACGCAAGAACTATTTGAGAAGCACACAGATATATTTCACCCGTTTGGTGGTCCACCAATGTGTCCAATCTGTTCTCGTACATTTGAAAATTCTAAAAAGCGCAACGTTCATATGTATATGTCGCATACAAAGCAAGAAGAATGTAAATGtaatatttgtgaaaaagttttCATGTCAAAAATTAAGCTTTCGGATCATAAACGACGAAGTCATGtaattggcgatcatgaatgtcCGGTTTGTATGAAAAAATTCAAGTTTATGTCCGTCTATCAAGCGCACATGAAAACGCACGTTAAGACTGTTAAATGCCGCCAGTGCGATAAACTTTTCGTAAGCGAAGCCAAAGCAAAAATACATGAACGAACTCATACAACGAAAAAATTCAAGTTTATGTCCGTCTATCAAGCGCACATGAAAACGCACGTTAAGAATGTTAAATGCCGCCAGTGCGATAAACTTTTCGTAAGCGAAGCCAAAGCAAAAATACATGAACGAACTCATACAACCGAGCGAAAGCATTTATGCAGTTTTTGTGGAATGACCTTTAAAAATGGAAGCGATCTAAATCAACATTTCGACAGTCAtaataatgaaagaaaatttaaatgtcagcattgtattgaaaaattcttTACAAGGCGTCAGGTTCGAAACCATGTAAAAATAAATCATGAAACTACTCGTCATCCATGCGATCTTTGCGGAAAGCTCTTTCGTCAAGAGCAGCTTCCTACTCATAAATACGCTGCGCATAATGGCGAAAAGCCGCCAAGTCGAGAGCCTAATAAAATTTATCCATTTAATTGTCCGATTTGTTCGAAAGGCTTCTTAACAGCTTCCAGTTTACTGTTCCATAGTAAAGTTCATACCGAAGATCGGAAACATGTCTGTACAGAATGTGGATTAAGATATAAACGTGCTGATCACTTACAGCTTCATATTAAGCGGATACATTTGAAGATTAAGAATTACGCGTGCGAAGTATGCGGAAGCAGATATCTCGAGAAAAACCAATTAAAAACACACATGATCATACATCAAAaaaatcGCCCGTTCAAATGCACTGAGTGTCCGATGGAATTTAAGACAAAACGTGGATTACAAATGCATAGTCAACGGCATACAGGCGAGAAGATTCATGCTTGTGGGATCTGCGAAATGTCCTTTCCTAATCGTCGATTGCTAGTCTTACATACGTTGACACATACCCAAgaacaaataaaagaaattgaattGGAAGTAGCAAGTTCGGCTGGACCTAAATCGGAAATGAAAATGGAGACTATAGACGGAGAAATGAAATTGGGAACTATAGACGGAGAAATGAAAATGGAGAATATAGACGAGCAATTAGAAGAATTGATACGTGATGCATAA
- Protein Sequence
- MDSKLLKETTCRMCMALSENFKEFTPISEVRTSRVEIFEEITSFNLEVNENDGLPQLICPKCIEEFDSVIQFRKRCLEVQTELRTYFEENPAVDDDENGDELDNNQEEIIDEEQEEAYQIDSENKSDSMETVLGTKYDVSEEEDENWECEYYIGSDEELDFLNACSTASKRVGKQKEKASKAEETQSTNIIDSKELGSHPSSNENREKETANDEEDNQYYAEDEMIEVSFEMDLSSEDNLNGNVDYNDIYNTLNSEHHEKLPEKCNKETKRYNCKYCDQGFEFVSLLNSHLKKCPKRNTVNCDICTVEFETQELFEKHTDIFHPFGGPPMCPICSRTFENSKKRNVHMYMSHTKQEECKCNICEKVFMSKIKLSDHKRRSHVIGDHECPVCMKKFKFMSVYQAHMKTHVKTVKCRQCDKLFVSEAKAKIHERTHTTKKFKFMSVYQAHMKTHVKNVKCRQCDKLFVSEAKAKIHERTHTTERKHLCSFCGMTFKNGSDLNQHFDSHNNERKFKCQHCIEKFFTRRQVRNHVKINHETTRHPCDLCGKLFRQEQLPTHKYAAHNGEKPPSREPNKIYPFNCPICSKGFLTASSLLFHSKVHTEDRKHVCTECGLRYKRADHLQLHIKRIHLKIKNYACEVCGSRYLEKNQLKTHMIIHQKNRPFKCTECPMEFKTKRGLQMHSQRHTGEKIHACGICEMSFPNRRLLVLHTLTHTQEQIKEIELEVASSAGPKSEMKMETIDGEMKLGTIDGEMKMENIDEQLEELIRDA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00324740;
- 90% Identity
- iTF_00324740;
- 80% Identity
- -