Ctib008779.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Chorisops tibialis
Gene Symbol
-
Assembly
GCA_963669355.1
Location
OY770262.1:187162022-187164981[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 16 0.14 16 7.6 0.6 2 22 126 146 125 146 0.94
2 16 2.6e-06 0.0003 22.5 0.9 1 23 176 199 176 199 0.96
3 16 0.0029 0.33 12.9 3.6 1 23 216 238 216 238 0.98
4 16 0.0072 0.81 11.7 1.1 2 23 249 271 248 271 0.94
5 16 3e-07 3.4e-05 25.4 2.4 1 23 277 299 277 299 0.99
6 16 0.37 42 6.3 3.4 2 21 304 323 303 324 0.90
7 16 0.22 25 7.0 1.0 1 23 330 352 330 352 0.97
8 16 0.12 14 7.8 2.9 2 23 354 376 353 376 0.96
9 16 3.8 4.3e+02 3.1 2.4 1 23 606 629 606 629 0.90
10 16 0.3 34 6.6 0.5 1 23 635 657 635 657 0.90
11 16 0.00022 0.025 16.4 3.6 1 23 673 696 673 696 0.98
12 16 0.0017 0.19 13.6 2.2 1 23 702 725 702 725 0.96
13 16 0.00042 0.047 15.6 0.8 1 23 747 769 747 769 0.98
14 16 0.00044 0.05 15.5 0.6 2 23 776 798 775 798 0.96
15 16 0.0021 0.23 13.4 3.8 1 23 873 895 873 895 0.99
16 16 1.8e-06 0.0002 23.0 1.3 1 23 901 923 901 923 0.98

Sequence Information

Coding Sequence
ATGAATTGTTCCCGCGAAACGAAAATGGAGATCTTTCATATCACGTTTCTAGATGAATGTGAAAATAATTCCGAAAATGTTTTGGaagttaaaaaagaaataatcgaATGCCAAAATGCAATAAACGAATGTGATGAAGTGGCAATAGAACAGTCGGGAATATTCGGACTTACGTTTAACAACGGCATAGGGGAAATCGAAACACAAAATAATCAAATCACGGAAAATAGATACGCTGGACAGTGTGAAATTGATCCGCAATGGGTAAGAGTGAAGCAAGAACCTGCTATCTACATCAGTGACGATGAAAACTTGTGTAATAGAACGAATACTGATCAAGATAAAACTGTGAATACACTGGATACTGCTGTATTGAAATGCCCGACTTGCTCTCATGttagcgtgagtttagaagaaCTCAGCAGCCATATTTGTACTAATGGCATCGTCAAGCAGTGGTGTAGCCTGTGTGTAAAAGAATTCAGTAGTACTGAAGTTCATCTTTGCGGTAAAGATATGTATTTATTCGAATGCGAAATATGTTCGGTGGTCTATAAGAACAAACGCAATTTAACCCGTCACATGCGTGCAAAGCATAGGAATAGAAAGAGAACTGATTCCGGAAAGAATTTGAATAGGCAAGAATATAATTGCAAAATTTGCTCTAAGTCTTACTACTATGAAAGACCATTTAAGCGTCATCTTAAACGTCACACGTCTTACCATTTACGGGATAATCATATCCGGTGCGAAATATGTGCGAAACTATTTACAAGTAAACGCTCCCTTCGATACCATAAGAGCATAAGGCATGCAATCAAGAGCCGATTTCAGTGCGAAATATGTTCCAAATCgttcatttttaagaaaagttTAACAAGACATATTCGAACTCATACGGCATTAATGACTTGCCATCTCTGTTTGACGACTTTTAAACGTAAAGAAAGTCTGGAatgtcatttaaaaaatggaatGAACTGTGCGTTCACATGTGAATTTTGCGAGGATGTTTTCTCATCTAAAAGTATTTTACATGAACACGCAAAGATCCATAACCAATGCAAAATTTGCTTTAGTACCTTTACAAGTAGACGTTATCTACAATTTCATATGATTAAAAAACATGCACATAAGATGAGTGAAAATAACTCAAAGATCGAATCGGACGAAGATGAAGAACAAAGCGAGAATTCAGTAATGGAAATGGCCAACGCGCCTATAATAGCTTCACCTTCACTTGAGATCAGGGAACGATACAGATCGGGAgcagaaaaagaaaatatattagaaATAAGTTCAAGTTCATGCGAAATTGATTTTCGACTTGTAGATATAAAACAGGAACCCGAGCTGGACATCGATTCAGATGAAGTGGTTTTGGCTGAAAACCAATCATTAAAAAGCTTTTCGATGGACGTTCTTCCCAAAAAATCTTCCATTTGTCGTGAAATGAGAGAGAAAGTAAATGAAAAATCGGTGAGAAAGAAAGACAAAAAATCTAAAATGGAAGCAATGAAAACGCGACATTTGCAACAAGTAAACATAAAACAGGAACCTGAGCTAAATGTATGCAATCTCGATGAGAGTGAAAGTGGAACGGACGATCTACTGCAGGCTAACAGTTTTAAATGTCCGCTCTGTTTTCACGATTCTCTCAATGAAGAAACATTGGCAACTCATATAATTGATAGTCACATCGTTGGTCAATGgtgtgaaatttgtgatgcagCATTTGACGGCAGCGCTGTACAACATTGTTCCTTCCATCTTCCGGAGAGAAAAGAATACGAAAATGAATTACAAGATATGGGATACGATTGCCAAACATGTTCAAAACGGTTTTGGTCTATATGCATTCTAAAGGTCCATATGAAAAAGATACATGGGCGATCGGGTGATTTCCAATGTGAAATATGTGCCAAAAGTTTCTTAACGATGGCAATTTTAAATCAACATCGCAAAAATCATACGAACGATCCAGACAGGAGTTGCTATGAAGTAAAAAATGGCGTATTCAAGTGTAAATTGTGTAGAAAAGTCTTTCAAACCAGACCTACCCTAAGGCATCATATAACCACAATTCATAATATCAAAACCGATTTTCCATGCGAAATATGCTCCAAATATTACTCAAATATCCGAAGTTTAAAAAGGCATTCCAAGAAAAAGCATGGAGATTTTATCACCACTAGCGCGTCTAACGGTTGCACTTTTGAGAAGACCATCGAAAAaagtttcacttgtgaaatTTGCGATAGAAATTTCGCTGCCGAATGTTTACTAAAATCGCATATGATCAGTCATTCAtcgaaaaaactattaaaatgtGGAATATGTTTTTCGCCctttaaatatttatcaaacCTAAGAATCCATATGAAAAACTTACACGCAACCGATTTTACGTTCAAGTGTTCGGCTTGCTCTTATGAATGCCTGAATTTGAAAGAGCTCGAAAATCATCTAGTCAGCAGGCATATCGTTGGTAAATGGTGCAAAATTTGTAATTCAGAATTCGAATGCCGACCAGAGAGTCATTGTCTCGAACATTTACCGGACATCGAATCAATCGATGAAAAAGTCGCCGATTATTCAGAATCGGACGGCATCTCATTCAaatgcgaaatatgtatcaaaaatttttcatgtaaaTCGAGTTTAACAAGGCACCTACGAATTCATACGGGAGAAAAACCTTTCAGATGCGACATATgctcaaaatgtttcgtgcgtAGTGGGCAATTAAGATCCCATATTGCAATACATACTAAGGAGAAGTAA
Protein Sequence
MNCSRETKMEIFHITFLDECENNSENVLEVKKEIIECQNAINECDEVAIEQSGIFGLTFNNGIGEIETQNNQITENRYAGQCEIDPQWVRVKQEPAIYISDDENLCNRTNTDQDKTVNTLDTAVLKCPTCSHVSVSLEELSSHICTNGIVKQWCSLCVKEFSSTEVHLCGKDMYLFECEICSVVYKNKRNLTRHMRAKHRNRKRTDSGKNLNRQEYNCKICSKSYYYERPFKRHLKRHTSYHLRDNHIRCEICAKLFTSKRSLRYHKSIRHAIKSRFQCEICSKSFIFKKSLTRHIRTHTALMTCHLCLTTFKRKESLECHLKNGMNCAFTCEFCEDVFSSKSILHEHAKIHNQCKICFSTFTSRRYLQFHMIKKHAHKMSENNSKIESDEDEEQSENSVMEMANAPIIASPSLEIRERYRSGAEKENILEISSSSCEIDFRLVDIKQEPELDIDSDEVVLAENQSLKSFSMDVLPKKSSICREMREKVNEKSVRKKDKKSKMEAMKTRHLQQVNIKQEPELNVCNLDESESGTDDLLQANSFKCPLCFHDSLNEETLATHIIDSHIVGQWCEICDAAFDGSAVQHCSFHLPERKEYENELQDMGYDCQTCSKRFWSICILKVHMKKIHGRSGDFQCEICAKSFLTMAILNQHRKNHTNDPDRSCYEVKNGVFKCKLCRKVFQTRPTLRHHITTIHNIKTDFPCEICSKYYSNIRSLKRHSKKKHGDFITTSASNGCTFEKTIEKSFTCEICDRNFAAECLLKSHMISHSSKKLLKCGICFSPFKYLSNLRIHMKNLHATDFTFKCSACSYECLNLKELENHLVSRHIVGKWCKICNSEFECRPESHCLEHLPDIESIDEKVADYSESDGISFKCEICIKNFSCKSSLTRHLRIHTGEKPFRCDICSKCFVRSGQLRSHIAIHTKEK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-