Ctib002234.1
Basic Information
- Insect
- Chorisops tibialis
- Gene Symbol
- -
- Assembly
- GCA_963669355.1
- Location
- OY770262.1:47451865-47459960[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 0.25 29 6.8 0.6 3 21 227 245 226 246 0.94 2 17 0.033 3.8 9.6 0.1 3 23 255 276 254 276 0.94 3 17 0.0035 0.4 12.6 1.3 3 23 284 305 283 305 0.94 4 17 0.32 36 6.5 2.3 1 20 312 331 312 335 0.95 5 17 0.58 66 5.7 0.8 1 23 340 362 340 364 0.73 6 17 0.0013 0.15 14.0 0.6 1 23 368 390 368 390 0.94 7 17 0.00011 0.012 17.4 5.9 1 23 394 417 394 417 0.96 8 17 0.2 22 7.1 1.9 1 14 457 469 457 477 0.75 9 17 0.73 83 5.3 0.0 3 23 486 507 485 507 0.93 10 17 0.041 4.6 9.3 0.3 2 23 514 536 514 536 0.94 11 17 1.9e-05 0.0021 19.8 0.6 1 23 541 564 541 564 0.97 12 17 0.0084 0.95 11.4 1.3 1 23 569 591 569 591 0.98 13 17 0.0021 0.23 13.4 3.6 1 23 597 619 597 619 0.97 14 17 0.0022 0.25 13.3 1.1 3 23 627 648 625 648 0.94 15 17 7.1e-05 0.008 18.0 0.8 1 23 671 693 671 693 0.98 16 17 0.00011 0.013 17.3 1.8 1 23 700 723 700 723 0.96 17 17 0.0063 0.71 11.8 0.3 2 23 730 751 729 751 0.97
Sequence Information
- Coding Sequence
- ATGGCACAGATAGAGGCTTGCCTAAATTCAAGACCGCTCTGCGAAATCACACACGACCCAAGCGACTTAACGCCCTTAACACCAGGACATTTTTTTATTGGAGAAAGCTTAATAACACTTCCAGAACCATCATTGCTGGACACACAAACTCATTGTCTTACACAACCGAAATGGAACAAAACCGAACCGAACTTAGAAATCGGAGACCTTGTAATTTTGAAGGAAGATCGATTGTTGCCGTCTCGCTGGCCAATGGCACGAGTCGTTGACACTCATCCCGGACCGGATGGACTTTTGTGGGAAAACGATGGACTACCACAGCAAATGTGTTTAAATTGTGTCGATATTTTCACATCATGTAGTGAATTTCGTAGACAATGCAACGACACGCAGGATAAACTCGCCTCTTATCATGCATTGGGACGAGTGAATGCTGAGAAAGTGGAtgttaaaatcgaaaaaattgaatttatagaTGTTGATTACGACGAAAAATCAtcTATTGATAACGAAGACACTCTTAGTTCAGCTGTGGACAATTCAAAAGACAACGATGATCATGCGGAATATTTGATAGAAACATTAAATAATGAAGAAAGTGAGGAAATCGTTGATGACGCAGTACAGTGCGAGAACAGCAATAACAAAGTTGAAAAGTACACTTTCAGTaccaaattttgtaaattttgtaaaGAAAAATTTCCTCGAAATATCTCGCGAAATGATCATATTAAAGTTTGTCCTGATCGAAATGTTGAACTTTGTGAATATTGTACCGTCGAATTTAAAACAACTGCAATGCTTGAAGAACATTTAGAGGAAATACATAAGGATAACAAAGATCCCATGTGCCCGATTTGTCATCGTACATTTAGAAGTTACAACTATCGTAATGCTCACGCTATAACTTATCATAGTGGTTTGCCTGAGAAATACGAATGCAATACTTGTAAAGGGTTATTTGGGAACCGAAATAGTCTTAGAAATCATATTTTATGTTACCATAAACCAACCAAATATCAATGTACGATTTGTCAACAACTGCTGCCCAATATTTTTCGATACAGATATCACATGAAAGCGCACCGTTTGGAAAAGAATTATAAATGCCAATATTGCGATAAAACTTTCATACAAATCGGTTTGAAGCGGGATCACGAATTGATTCATACGGGGTCGCATTCGTGTAATTTTTGCGGCAAaaGCTTCAAATACGCTCGATATTTACGTCATCATATCGAACGTTATCACGATCTGAATAAAAATAGCGCATTGGATAATAAAGAAAATGAGCAAGTTGATGAAATTCAGTCTAAGAATAACGACGAGGAAAatGGCGAAGCTAATGTGGTGGCACAAAGAAAATATTTCGTGTGTAAATATTGTAAGAAACGATTTTTCCGTACTAAAATCGAAAGCCACACAAAAATTTGTCCGAAACGAGATTCGCCAATTTGCGAATTATGTACCGATGAATTCGATTCAGCAGAGAAACTTGAAATACACTTGAAAGACATACATGAGGATGATAAGAGACCTAGTTGTAACATCTGCTATCGTAAATTTGCATCCGAAGCCTATCGCCGAGTTCATGTCCGAGCTTATCATACCGAGCGACAATTTATTTGCAAGATATGCAGTCGAGTACTTAGAACTAAATATGGTCTTTGGAGGCATATGCAGCGTGTTCATTCGGAAACTAAATATCAATGTTCGCTCTGTCCGAAGCAACTGAACAATGTTTTTCAATACAGATATCATATGAAAGCTCATAAACCGAAAAGGAAGTTCCAGTGCCAATATTGTGATAAATCATTCATGCAACTTCGTCATAAGCAAGATCATGAAAATGTTCATACAGATGAACGACCGCATTTATGTAATGTTTGCGGAAAAGGCTACCGAACCGATCAACAGCTACTTTCCCATATCGACAGATTTCATAATTCAGGCGAAAAGAAAACAACTAAATCTAAGAAAAAGACATCCAAAATTTCACAACCTTATCCATTCAATTGTACGCTTTGCTCGAAGGGTTTTCCAGTTTCGTTTGCACTAACACGTCATCTAAAAACTCATACTGACAAAGAACGTAAGCATGTTTGCGAACAATGCGGGCAAGCGTTCAAACGAACTGTACATTTAAATCTTCATGTGCAACGTGTGCACTTAAAACTGAAAACGATTACATGTGATTTTTGCGACAAATTATTTATGAATAATGGTGAAAAGAGGGCACATATGGTAACACATAAAggttaa
- Protein Sequence
- MAQIEACLNSRPLCEITHDPSDLTPLTPGHFFIGESLITLPEPSLLDTQTHCLTQPKWNKTEPNLEIGDLVILKEDRLLPSRWPMARVVDTHPGPDGLLWENDGLPQQMCLNCVDIFTSCSEFRRQCNDTQDKLASYHALGRVNAEKVDVKIEKIEFIDVDYDEKSSIDNEDTLSSAVDNSKDNDDHAEYLIETLNNEESEEIVDDAVQCENSNNKVEKYTFSTKFCKFCKEKFPRNISRNDHIKVCPDRNVELCEYCTVEFKTTAMLEEHLEEIHKDNKDPMCPICHRTFRSYNYRNAHAITYHSGLPEKYECNTCKGLFGNRNSLRNHILCYHKPTKYQCTICQQLLPNIFRYRYHMKAHRLEKNYKCQYCDKTFIQIGLKRDHELIHTGSHSCNFCGKSFKYARYLRHHIERYHDLNKNSALDNKENEQVDEIQSKNNDEENGEANVVAQRKYFVCKYCKKRFFRTKIESHTKICPKRDSPICELCTDEFDSAEKLEIHLKDIHEDDKRPSCNICYRKFASEAYRRVHVRAYHTERQFICKICSRVLRTKYGLWRHMQRVHSETKYQCSLCPKQLNNVFQYRYHMKAHKPKRKFQCQYCDKSFMQLRHKQDHENVHTDERPHLCNVCGKGYRTDQQLLSHIDRFHNSGEKKTTKSKKKTSKISQPYPFNCTLCSKGFPVSFALTRHLKTHTDKERKHVCEQCGQAFKRTVHLNLHVQRVHLKLKTITCDFCDKLFMNNGEKRAHMVTHKG
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -