Ctib021367.1
Basic Information
- Insect
- Chorisops tibialis
- Gene Symbol
- -
- Assembly
- GCA_963669355.1
- Location
- OY770263.1:113838047-113839390[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 3.4 3.8e+02 3.2 0.1 2 12 59 69 58 81 0.77 2 11 0.0005 0.056 15.3 1.3 2 23 143 164 142 164 0.95 3 11 0.03 3.4 9.7 0.6 3 23 189 209 188 209 0.98 4 11 0.17 19 7.3 1.0 2 23 225 246 224 246 0.86 5 11 0.0001 0.012 17.4 0.4 1 23 252 274 252 274 0.98 6 11 2.6e-06 0.00029 22.5 2.6 1 23 280 302 280 302 0.98 7 11 6.6e-06 0.00075 21.2 0.5 1 23 308 330 308 330 0.97 8 11 2e-06 0.00022 22.9 1.8 1 23 336 358 336 358 0.99 9 11 0.00023 0.026 16.4 2.7 1 23 364 386 364 386 0.97 10 11 3.4e-05 0.0038 19.0 3.6 1 23 392 414 392 414 0.97 11 11 5.2e-05 0.0059 18.4 0.1 1 23 420 442 420 442 0.98
Sequence Information
- Coding Sequence
- ATGAGTTTACCGGAAATTGAATTTATAACGACAGATTCAGATATTAAGCACGAAAGTGACATCAAagacgaaatttataccgacaACGAAACTGCCGGCGATACGTTGGCAACAGATGAGGACGAGAGAAAATGCGGTGAGATTTTCCTCACAGAAAGCGGAAGTTTCACTTTAATTTGTGCTTATTGCGGTGCACGCTTCATAAATATGAGAATATTCGGGGAACACTGGCAGTCGCAGCACGGTAACGATATTTTCGATGGACAATTTCCCGTGGAATATACAAAACCGGAAATTCTCGAGGTCCAATGTACAGAAATAGAAGGTCCACAAAATTCCACATGCGATAAGTTCAACGATTCACATTCTCGAAAGGAAGAAGCAAGCACTTCCGTCGATTCGCAACTTAAACCAAAAATGAAATGGAACTGCGCGATTTGTCATCGCGGTTACGAGAACAAGTCGTCGTTATTGCGGCATAAGAAGGGTCACAAGCTAGAAGTGCAAGCGGAACGCAAAAAAGATAATGTCAACGATGAATCCAAATCCGGAGCAAAACTCCTATGTGATATATGCAACCGCGAGTATCCATCTATGACGAAATTCAAAAATCACGCTTTACGTCACGGTAAACAAACACCGCTCCTGCTACAACAAGACTCCACATATTTGAAGTGTAAGTATTGCTTTAAAGAGTTTGCCGATCGACTTGTAAAACGCGAGCATGAACTCACTCACGACAAGGAGCGGCCTTACCAATGCTCTCAATGTCCGAAATCGTTCAAGAATGGCGCTATGAGAGAAATGCACATGAACATTCACACAGGTGAGCGTCCGTATAAGTGTTCCAAATGTTCTCGCGCCTTTTCTTCTTCAGACTATCTGCGAAATCACTTAAAGAACCATCTTGGCATCCACAAATACTTTTGCGAAGTTTGCGGCAAAGGATTTATACGAAACGTGAACCGCAAGATTCATATGCGGCTACACACGGGAGAGAAACCTTATCAGTGTGAGGAATGCGGCAAAAACTTTACGTTCAGTCAAGACCTTCTCCAACATCGAAAAAGACACTCGGAAATCAAAGACCATAAATGTGAGGTTTGCGGTAGCCAGTTCTATTCGAAAACACAGCTTAAAAATCACCAGGTTATGCATTCTGACGAGCGTCCACACAAATGTTTAGAATGCGGTCGCTGCTTCCCACGGAGGAAAGCGTTAAAGGCTCATGAGAAACTGCATTCGAATATTAAGGAATACGTCTGTAACATTTGCGGGATGGAATTCGCACAAGCTGCCGGCTTGTATTCGCACAAAAAATCACATGGAGAAAGGATGGATTAA
- Protein Sequence
- MSLPEIEFITTDSDIKHESDIKDEIYTDNETAGDTLATDEDERKCGEIFLTESGSFTLICAYCGARFINMRIFGEHWQSQHGNDIFDGQFPVEYTKPEILEVQCTEIEGPQNSTCDKFNDSHSRKEEASTSVDSQLKPKMKWNCAICHRGYENKSSLLRHKKGHKLEVQAERKKDNVNDESKSGAKLLCDICNREYPSMTKFKNHALRHGKQTPLLLQQDSTYLKCKYCFKEFADRLVKREHELTHDKERPYQCSQCPKSFKNGAMREMHMNIHTGERPYKCSKCSRAFSSSDYLRNHLKNHLGIHKYFCEVCGKGFIRNVNRKIHMRLHTGEKPYQCEECGKNFTFSQDLLQHRKRHSEIKDHKCEVCGSQFYSKTQLKNHQVMHSDERPHKCLECGRCFPRRKALKAHEKLHSNIKEYVCNICGMEFAQAAGLYSHKKSHGERMD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -