Ctib013991.1
Basic Information
- Insect
- Chorisops tibialis
- Gene Symbol
- -
- Assembly
- GCA_963669355.1
- Location
- OY770262.1:282523307-282529994[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 0.0062 0.7 11.9 1.4 1 23 180 203 180 203 0.95 2 19 0.7 79 5.4 0.3 1 13 246 258 246 265 0.87 3 19 4.9e-05 0.0055 18.5 0.1 1 23 274 297 274 297 0.96 4 19 2e-05 0.0022 19.7 0.1 3 23 310 331 308 331 0.95 5 19 0.036 4.1 9.4 0.1 3 23 338 359 337 359 0.96 6 19 0.051 5.7 9.0 1.6 1 23 365 388 365 388 0.97 7 19 0.014 1.5 10.8 1.4 2 23 402 424 401 424 0.90 8 19 0.00096 0.11 14.4 2.1 1 23 432 454 432 454 0.98 9 19 0.00078 0.088 14.7 0.1 1 23 460 483 460 483 0.98 10 19 0.3 34 6.6 2.3 2 23 490 512 489 512 0.95 11 19 0.0023 0.25 13.2 2.8 1 23 550 572 550 573 0.96 12 19 6.8e-05 0.0076 18.0 1.7 1 23 581 604 581 604 0.98 13 19 2.1 2.4e+02 3.9 0.2 2 23 610 631 609 631 0.91 14 19 5.1e-05 0.0057 18.4 0.2 2 23 638 660 637 660 0.95 15 19 1.5e-05 0.0017 20.1 1.4 1 23 669 691 669 691 0.99 16 19 0.056 6.3 8.8 0.5 1 23 697 720 697 720 0.96 17 19 0.0093 1.1 11.3 0.5 2 23 751 773 750 773 0.96 18 19 0.012 1.4 10.9 5.2 1 23 782 804 782 804 0.97 19 19 0.067 7.5 8.6 2.6 1 21 810 830 810 833 0.95
Sequence Information
- Coding Sequence
- ATGAATTTCGAAGAAATGTGCAGATTTTGCTTACGGGTCGAGCTGAACATGAGTCCGCTTTTTAACGAATTGGATTCCATGCGAGCTGCAGTAATTGATTTGCTCAAAAGCGCCGCAAAAATTGAGattttcgaTGGCGATGGCTTTCCCAACCAGATTTGTACAAACTGTCTCGATAAATTTCTCCAAATTTACTCGTTCGTATTGCAATGTAAAAGATCCGACGTTATCTTGAAGCAACTGAAAGTTCCGATAGTTTATTTAAATCAGTTGAAATTAATCCCGTGCATAGAAACATACAACAATCCAAGCTATTTGGTTTCGGAAAGTCTTCCGTTCGTCAGCTACGAGAAAATTGAATGTTTCAAAACGGAAGAGAACACATCATTCGATATTCAAAACTATTTAAACGACGATATAAAATATATTGATCCCATTGAGCATGAAGCCATTTATAATGGTTCCGAGGAATATTTAGAATCCGCATTCGAGCCGGATAGCATAATAGAATTGGATGAAGCTGCCGATAATGAACTTTTCAAATGTCCGGACTGTCATATTGAGTGCATGACACTGAAGCTGCTGCAGGAACACATAATCGAAAATCATCTGGTCGATAAACTGTGCAAGATTTGTGACGAAGAATTTAAATGTAGCGCGATTGAGCATTGTTGCAAACATCTGCCGGTGGATCGGGATTCAACGGATGTATTCGTCATTAAAGACAATAAAAAATACCGTTGTGTTTTATGCGAAAAATCATTCCAAACGAAACTCCGTTATGACGAACACGCGAGTTTATTTATCCGGCAACATTCATTCGAATGTGGAATATGTGGGACAGTTTTTCGTACTATAGTAAATCTGAATGGTCACATCAAACAGAGCCATGAAATTGTTGTGAATCAGAAAAAACGGAAACTAGATTGCTCCGtatgtttcgaaattttcagcaGTCAAAGTGAACTGATAAAACACATGAGAGAAGGTCACATCGATGATTCGCAGGCATGTGGAATTTGTTTTCagtcatttcaaaatgcaaCTGTACTGGCTAATCATATGGTAACGAGTCATAGTGAAAAGAAAACGTTCAGTTGTGTGAAATGCGCGCTCTTTTTTAGATCACGATCCGGTTATGTACAACATTATCAAAAAATGCACGGTGGTAAATTGTCGCATCCGAAAGAGGAAAAAATATGGAAATGTGAAATTTGTTTGCATAGCTACGTGCAAGAAAGTGATTTGTTCAAACACTTGTACTTTCGTCATTCGGAGCCTACTCATACTGGTTACAAGTGCGCGACATGCTCGAAATTATTTCGATATAAAAGAAGTTTAATGGCGCACGAAAAAAGTCACAAGGCTGTAAAACTATTTCAGTGTGCGATTTGCTTAGAAAGGTTCGAGGAGAAAGACAATTTAAGCGATCATGCGCGTACGGTTCATCCAAACAATCAATCGAATAAATGCGAAATGTGCCCTAAAGTATTTTTGTGCAGAGACAGGTTGCGAGCTCATATGAGAGAGAAACATGTGCTCCTGAGTTGTGATGAGAACAATATCAAGAATAAACCAGGACCAGCAATTGTCCAAAGCGAATTGAATTTGATTGAGTATCCAAAAACCCACTTGGAAAAAGTGCGTTATAATTGCGATAATTGCGACAAAACATGTTTGAATAAATACGCCTTAGTGGAACATATACGCGTGCATCATTCAGGACCGAACCCGTACAAATATCAATGCGATGAATGTCCACAATCGTTCCTCCGTCATAATAATTTACTACGCCATATACGAGTCTTTCATTCAGGTCAAGGAATAAAATGCGATATATGTTCAAAGCCGATGGGCTCTGAGCAACGAAAAGCGATACATATGAGAACTCATACTGGCGAAAGGCCGATTGAATGTAAGATTTGTTTTAAATCGCTGCGCTATGAAAGTAATTTAAAGGCCCACATGATAGTAATGCATCCGGAATTATCGGATGCGGTCGGTTACAAGTGtgaaatttgctcgaaaatttgtGCAACTAAAAGTAAATTGGCTGCGCACGAACGAACGCATAAATCGGAACGAGCATTTCAGTGCGACCTTTGCGATGTACGGGTGAAATACAGCGGCAGTATTAGAATACACAAACGTTTGAAGCATGGCGTCATTGAAGCTAAAGGTTCACGTGTGCTAATACCAGAAACGGTGGAGGTGCCGATGGTAAAAGAGAAAATTAGTCCTAAACCGGTTCAATGTAAGTTTTGCCCGAAAACGTTGCagagtgaaaaatatttaaggaCCCATGTGATGGTGTTACATCCGGAATCGTCGGATTCGATTGGACACATATGTgatatttgctcgaaaatctgcGTAACTAGAAACAAATTGAAAGAGCACAAGCGCAAACATTACTCGGAAAAACGATTTGAATGCGATATATGCGGCGATCGGTTTAAATACAAACCTAATATTAGAGCACACAAACGTTGTAAGCATGGCATCATTGAACCAAAAGGTTCTCGATCGCAGATACGAGAAACGGTAGAGCCGCCACCGCCAAATGAACCGTCGGAGATGCCAATTACTGAATCACATATTGAACTCGATTTAACGGATATGATGGAGATATCTGTTTAA
- Protein Sequence
- MNFEEMCRFCLRVELNMSPLFNELDSMRAAVIDLLKSAAKIEIFDGDGFPNQICTNCLDKFLQIYSFVLQCKRSDVILKQLKVPIVYLNQLKLIPCIETYNNPSYLVSESLPFVSYEKIECFKTEENTSFDIQNYLNDDIKYIDPIEHEAIYNGSEEYLESAFEPDSIIELDEAADNELFKCPDCHIECMTLKLLQEHIIENHLVDKLCKICDEEFKCSAIEHCCKHLPVDRDSTDVFVIKDNKKYRCVLCEKSFQTKLRYDEHASLFIRQHSFECGICGTVFRTIVNLNGHIKQSHEIVVNQKKRKLDCSVCFEIFSSQSELIKHMREGHIDDSQACGICFQSFQNATVLANHMVTSHSEKKTFSCVKCALFFRSRSGYVQHYQKMHGGKLSHPKEEKIWKCEICLHSYVQESDLFKHLYFRHSEPTHTGYKCATCSKLFRYKRSLMAHEKSHKAVKLFQCAICLERFEEKDNLSDHARTVHPNNQSNKCEMCPKVFLCRDRLRAHMREKHVLLSCDENNIKNKPGPAIVQSELNLIEYPKTHLEKVRYNCDNCDKTCLNKYALVEHIRVHHSGPNPYKYQCDECPQSFLRHNNLLRHIRVFHSGQGIKCDICSKPMGSEQRKAIHMRTHTGERPIECKICFKSLRYESNLKAHMIVMHPELSDAVGYKCEICSKICATKSKLAAHERTHKSERAFQCDLCDVRVKYSGSIRIHKRLKHGVIEAKGSRVLIPETVEVPMVKEKISPKPVQCKFCPKTLQSEKYLRTHVMVLHPESSDSIGHICDICSKICVTRNKLKEHKRKHYSEKRFECDICGDRFKYKPNIRAHKRCKHGIIEPKGSRSQIRETVEPPPPNEPSEMPITESHIELDLTDMMEISV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -