Ctib002232.1
Basic Information
- Insect
- Chorisops tibialis
- Gene Symbol
- -
- Assembly
- GCA_963669355.1
- Location
- OY770262.1:47419784-47431610[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 24 0.00075 0.085 14.7 0.2 2 23 83 105 82 105 0.96 2 24 0.54 60 5.8 0.8 2 12 115 125 114 140 0.63 3 24 0.0025 0.28 13.1 2.4 1 21 176 196 176 196 0.96 4 24 0.098 11 8.1 0.3 3 23 206 226 206 226 0.98 5 24 1.4 1.6e+02 4.5 0.1 3 23 234 255 233 255 0.83 6 24 4.8 5.4e+02 2.8 2.0 2 23 262 284 261 284 0.94 7 24 0.0032 0.36 12.8 6.1 1 23 289 312 289 312 0.99 8 24 0.00024 0.028 16.3 1.5 1 23 316 338 316 338 0.98 9 24 0.0014 0.15 13.9 1.6 3 19 346 362 344 365 0.93 10 24 0.0027 0.3 13.0 1.4 1 23 370 393 370 393 0.98 11 24 0.0027 0.31 13.0 3.1 1 21 429 449 429 449 0.96 12 24 0.49 55 5.9 0.2 3 23 459 479 457 479 0.97 13 24 0.031 3.5 9.6 0.6 3 23 487 508 486 508 0.94 14 24 0.29 33 6.6 2.8 2 23 515 537 514 537 0.95 15 24 0.0087 0.98 11.4 2.6 1 23 542 565 542 565 0.98 16 24 0.00037 0.042 15.7 1.4 1 23 569 591 569 591 0.98 17 24 0.0016 0.18 13.7 2.3 3 20 599 616 597 619 0.93 18 24 0.0022 0.25 13.3 0.7 1 23 625 648 625 648 0.98 19 24 0.023 2.6 10.1 0.1 3 20 655 671 654 675 0.82 20 24 0.055 6.2 8.9 0.1 1 23 691 713 691 713 0.96 21 24 1.7e-05 0.002 19.9 1.6 1 23 719 742 719 742 0.97 22 24 0.036 4.1 9.4 1.9 1 23 748 770 748 770 0.95 23 24 3.1e-05 0.0034 19.1 4.6 1 23 776 798 776 798 0.99 24 24 0.0041 0.46 12.4 0.2 3 23 806 826 805 826 0.99
Sequence Information
- Coding Sequence
- ATGTTAAAAGTATATTTTATTGGATCGATGGAAATTAaagcagaaaaaaatgatgacatAGAAATAGAGTTTGTTGATGTCGATATTAAAAACGAATCTGAAACcttaaaaaatttggaatatctCGAAAACCCCAGCTATGTGCCAGATTCCGAACATGATCAATATTCGAATTCGGATTCCATGTCGGATGATGAAAATAACATCGATTTGGATGTTTGTAAAATTGAATTGGAAAACGAaacgaaatgtaaaatttgtgatgaagaATTTCAAACGAGTCTTGAGCTTGAGGATCATTTAAAAGTCATACATAAAAACGATTCCAGTGATTCCGAAATAAAATGCGAGGAATGCAATCGGACATATAAAAatttcagATATGAATCACGTTACAAAGAGCATTTGGTACGCTATCATCGAGACGAGGACATAAGAGAAATTGTTGGTGATGCTATGATGCAAAAGGATCTTAAACCTGTTAGAAGTCTAATTCCACGAAATAAAGAAAATAATTCAAGTGAATATTCCTGTAAAAATTGTCACAAAAATTATAGTACGCTGGTTCGATTAAATAAACATATCAAATGTTGCAAGAAACGGAAAAATGTTGGTTGCGATATTTGTACTCTCCAATTTGCATCTGAAGTATTATACCAAAAGCACAAAGAATCTCATTCAATCGATAGTTTACCGTTTTGCCCAATTTGCTCTCAAACATTTGAGGCAGCAGAGAATCGAGATGATCATTTGGTTTCGGCTCACGATACCCGAGAGAACAGTAGATGTGATATTTGCCATCAGCTTTCCATGTCGAAACTGAAGCTCTTAAAGCACAGAATACGAATTCATCCAATCGGTGACTATGAATGTCCCGTTTGTAACAACAAGAAATTCAGTTATTATCATCACTACAATATTCACATGAGAAAGCACATTAAGAACTTTAAATGTAATTATTGtgataaatatttctatactcCATACAAAGTAGTCTTGCACGAACGAGTACATTCAGACAAAAAGCCACATTTATGTACTGTTTGCGGAATGActtttaaaaatacatCCGACCTTAATCAACATTCTCATAACGATCAGTACAATTTTAAATGTAGTGAATGCGATGAAGCTTTTTTGACGCGAAAAAAACTCGGATCTCATATGAAAAGACGACATAAGAGTAAACGTGATATTTTTGGCAAGaTTGAAAATGAATGTTCTAAGGAAGATAGTTCTGCAGATGATAACGATGCAGAGCTAAATGAAAATGAATCGAGTCAATATTCCTGTAAAAATTGTCACAAAAATTATAGTACGCTGACACGATTAAATAAACATATCAAATGTTGCAAGCAACGGAAAAAATTTGGTTGTGATATTTGTGTTCTTCAATTTGAATCTGAAGTATTATACCAAAAGCACAAGGAATCTCACTCGATCGATAGTTTACCGTTTTGTCCGATTTGCTCGCAAACATTTGAGAATGCTGAGGAGCGACATGATCATATGGTTTCGACTCATGATACCCGAGAGAACAGTAGATGTGATATCTGCCATAAACTCTCCACGTCAAAATTAAAGCTACTGAAGCACAAAATAAGAATTCATCCAATCGGTGAATATGAGTGTCCGGTTTGTAAGGACGAGAAATTCAGTTATTATCATCTCTACAATATTCACATGAGAAAGCATATCAAGAACTTTAAATGTAATTATTGCGGTAAATTATTTTATAGTCAGTATAAGGTAGTTTTGCACGAGCGAATTCATACAGGCGAACAGCCGCATTTATGCAATGTTTGTGGAATGACTTTCAGAAATGTATCCGATCTTAATCAACATTTGGATTGTCATAATGATCAGAACAATTTCAAATGTAGTGAATGCGATGAAGCTTTTCTGACTAGAAAAAAACTGGGATCTCATATGCAAAGATGGCATAAGAGTAAGCGCGAACCGTGTGATATATGCGGAAAGGTATTTCGCGTTAGACAACTGGCTATACATAAATATGATGCACATAACGGCGAGAAGCCACCGAGTCAAGTAGCTGATCGGTCTTATCCGTTTAATTGTCCCGTCTGCTCGAAAGGATTCTTGGCCGCTAGCAGCTTACTGGCACACAGTAAGGTACACATGAATGATCGTAAACATGTTTGCCAGGATTGCGGAGCAAGATATAAACGTGCTGATCACTTAACACTTCATATTAAACGAGCACATTTAAATGTTAAAAATCATTCGTGTGATGTATGTGGAAAGAAGTTTTTAGAAAAGTGTGCTTTAAAGGGGCATATGGTAGTTCacctaaAAACCCGGCCCTTCAAATGTTCTCAATGTCCATGTGATTTTAAAACAAATCGGTCATTACAGACTCATATACGAACCCATACCGGCGAATCGCCGCATGGCTGCGGAATTTGTGAACAACGTTTTCCCAATCGCCGATTGCTAGTGTTGCATACGATGACACATTCGCAAGAGCAAATAAAAGAAATCGAAGTGGTAGTAGCGAATGCTGTTGGAGGTGTAGAACCCAACGATGATATGAATCTGAATTATGTGCAATACAGTTAA
- Protein Sequence
- MLKVYFIGSMEIKAEKNDDIEIEFVDVDIKNESETLKNLEYLENPSYVPDSEHDQYSNSDSMSDDENNIDLDVCKIELENETKCKICDEEFQTSLELEDHLKVIHKNDSSDSEIKCEECNRTYKNFRYESRYKEHLVRYHRDEDIREIVGDAMMQKDLKPVRSLIPRNKENNSSEYSCKNCHKNYSTLVRLNKHIKCCKKRKNVGCDICTLQFASEVLYQKHKESHSIDSLPFCPICSQTFEAAENRDDHLVSAHDTRENSRCDICHQLSMSKLKLLKHRIRIHPIGDYECPVCNNKKFSYYHHYNIHMRKHIKNFKCNYCDKYFYTPYKVVLHERVHSDKKPHLCTVCGMTFKNTSDLNQHSHNDQYNFKCSECDEAFLTRKKLGSHMKRRHKSKRDIFGKIENECSKEDSSADDNDAELNENESSQYSCKNCHKNYSTLTRLNKHIKCCKQRKKFGCDICVLQFESEVLYQKHKESHSIDSLPFCPICSQTFENAEERHDHMVSTHDTRENSRCDICHKLSTSKLKLLKHKIRIHPIGEYECPVCKDEKFSYYHLYNIHMRKHIKNFKCNYCGKLFYSQYKVVLHERIHTGEQPHLCNVCGMTFRNVSDLNQHLDCHNDQNNFKCSECDEAFLTRKKLGSHMQRWHKSKREPCDICGKVFRVRQLAIHKYDAHNGEKPPSQVADRSYPFNCPVCSKGFLAASSLLAHSKVHMNDRKHVCQDCGARYKRADHLTLHIKRAHLNVKNHSCDVCGKKFLEKCALKGHMVVHLKTRPFKCSQCPCDFKTNRSLQTHIRTHTGESPHGCGICEQRFPNRRLLVLHTMTHSQEQIKEIEVVVANAVGGVEPNDDMNLNYVQYS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -