Ctib016538.1
Basic Information
- Insect
- Chorisops tibialis
- Gene Symbol
- -
- Assembly
- GCA_963669355.1
- Location
- OY770263.1:9094316-9097114[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 7.4e-05 0.0083 17.9 0.1 1 23 330 353 330 353 0.93 2 12 0.00016 0.018 16.9 2.7 1 23 361 383 361 383 0.98 3 12 1.2e-05 0.0013 20.4 1.2 1 23 390 412 390 412 0.99 4 12 2e-05 0.0023 19.7 2.3 1 23 418 440 418 440 0.99 5 12 0.00098 0.11 14.4 1.9 1 23 447 469 447 469 0.97 6 12 2.3e-05 0.0025 19.5 0.3 1 23 475 497 475 497 0.95 7 12 6.4e-05 0.0072 18.1 0.3 1 23 503 525 503 525 0.98 8 12 6.2e-06 0.0007 21.3 1.2 1 23 531 554 531 554 0.96 9 12 7.5e-06 0.00084 21.0 1.8 1 23 560 583 560 583 0.97 10 12 4.8e-05 0.0054 18.5 2.2 1 23 589 611 589 611 0.98 11 12 3.3e-05 0.0037 19.0 0.5 1 23 617 639 617 639 0.96 12 12 0.0012 0.13 14.1 0.1 1 22 645 666 645 669 0.92
Sequence Information
- Coding Sequence
- ATGGCATCCACGCTAGTAAAGGACGAGGAGATTGCGGCGATGAAATGTTTCGTCTGCAATCATGAAATGTTGCCGGGCGAGTTGGCCTTTTGTTTGTTCAGCGAGCGGGTAGGCGGAGCGCAGGATTCTCCCATGTCCGAAGTGCTGTCTTCGATCCTGTCGTACCGGCTGATGGAGAACAATGTTTACTCCAAGGTACTATGCGAGGAATGCAATACACGCGTGAATAAATACGAGGAATTGGAACAACAAATGCTCGAACTTAAGTATAAAATTATTCAGGACTTTAATATTACAAGTCGAATCAACGAGGGCGTTATTATACAGTTCGATATTGAAGAAGAATTCGATGTAGCACTCGAAGATACTGCTGAGCCCTCCATTGAgcaggacgaagaaggaaacgtTTTAGACACAGCTAAGGAGGATGAAACCATTAAAGAAAACACCGGCGAAGAAACTACAGATGCAGACGTCTTGAGGTTACTATCGTCATCAAAAGAAGAATTAGCGAATTTTGCAATTGATAGCGGCAAGCACATCAAACTGGAGAATGTTGAGTCCGAACTGGAAGCGGAAGAATACTTTGATCAGAGTACCGGAAACATGGTCGAAATCATCACAGAAAACGACGATTATAGCCAGCTAATTGAGCAGGCTACTACGTCAGCCAATGACGAAAGTACTTGCGAGAGTATtgcaatgcaaaatttaaataaagacaCCGAACTGACGTCTGCCATAAAGGTAGTAAAAAGCGAAAATCTTCTCAACTCAGACCAAGGGTCTGCCGTTCGCACGGTCGAAAAACGTAAGAGACCTTTAAAAGTTGAAAGTTCTGAAGATCGCAAGCCATGCTTTACTTTAACCGACGACAAATTCACTTGCATACTCTGTCCGGGGGACGGTGGTGGTGATGCCAGTCTCGAGTATGACGATGTCCGCACGATTTCCACTCACCTGAAAACAGTTCACAACATCCGTGCTTACATTTGTGATATTTGTGGTGAGGACTTCCGGAAGCGAAACGACCTCACGGAGCATATGGACGACGATCATGGTGGTACCGAAGACGGAGAATTCCAGTGCGAAACGTGCAATCGGATTTTCACAAATTTGCGACAATTTCGCATACACAAGCGGTTGCACTTCACTTCGGCCAAGTCCTTCCAATGCGATCAATGCGATAAGAAGTACAGTTCGAAGAATTTACTGGACGAGCACATGAATATGCATACGGGAATGCGTCCGTACAAGTGTCAGCACTGCGCCAAAGATTTCGCATCAAAATATACCCTTACTGCACATCTAAAAATTCATTCGAATCGTCCGCGTCCACACAGTTGCTCGCAATGCTCGAAGGCATTCTTCAGTGCGCAGAATTTGCTTCAGCACGAAAAGATTCATACGGGTGTAAAGGAATACATTTGCGATGTGTGCGATAAAGCGTTCGGAACGCAGCACAATCTGGAAGTACACAAAGTCGTACACACAGGCTACAAACCCTTTATATGCCGTACTTGTGGTAAAGCGTTCGCTCGGCGAGCAGAAATAAAGGACCACGAACGAACCCATACTGGCGAACGTCCGTTTTCGTGCGACATTTGTAAAATGTCGTTTGCGCAAAGATCAAACTTGACCACGCACAAACGAGCCACGCACTTTAATGATAAACGTTATAAATGCGAGCAGTGCGATCGTTCGTTTAAACGGCGGCGGTTACTCGATTATCATATGCGTGCCTTGCACACTGGCGAGCGACCCTACGTCTGTAAGTTGTGCAATGCAACGTTTGTATATCCCGAGCACTACAAGAAGCATACCCGAATCCATAGCGGCGTCAAACCATATGCATGTGAAGTTTGCGGAAAAACTTTCAACAGTCGTGACAATCGGAATGCCCATCGATTTATACATAGCGATAAAAAACCGTATGAATGCATGGTTTGTGGTCAAGGTTTCATGCGAAAACCCTTACTATATGCGCACATGCAGCAATCGGGACACATTAACGATACGATCATAATCAATCAGCCACGAATATTTAAAGAAGGCGACGAAACACCAGTTGATGATGATAATCTAATTGAAATGGTTGCCGACGACGAGATGGTCGAAGAGCACCTTATAATCGATGGTCCCGTTCAGTTTGGTGCTGAGTCGGAAAGTCAAGCGACCGCAGATGAATCAACTGCCGAAGAGAATTCTATTTCGAATGAAATGCTGGAAGATCATCTTTCCGAAGTAATGAATTCGGATCAATATGTGGTCGCAGATTGTAGCGACAGTGCAACAATGCAGTTAGTTCAAATTCGTACCAAGGACAAAAATGGTAAAGAGGCCTACACTTGGGTTAATTTTGTAGACGAAAAGGAAAGCTAA
- Protein Sequence
- MASTLVKDEEIAAMKCFVCNHEMLPGELAFCLFSERVGGAQDSPMSEVLSSILSYRLMENNVYSKVLCEECNTRVNKYEELEQQMLELKYKIIQDFNITSRINEGVIIQFDIEEEFDVALEDTAEPSIEQDEEGNVLDTAKEDETIKENTGEETTDADVLRLLSSSKEELANFAIDSGKHIKLENVESELEAEEYFDQSTGNMVEIITENDDYSQLIEQATTSANDESTCESIAMQNLNKDTELTSAIKVVKSENLLNSDQGSAVRTVEKRKRPLKVESSEDRKPCFTLTDDKFTCILCPGDGGGDASLEYDDVRTISTHLKTVHNIRAYICDICGEDFRKRNDLTEHMDDDHGGTEDGEFQCETCNRIFTNLRQFRIHKRLHFTSAKSFQCDQCDKKYSSKNLLDEHMNMHTGMRPYKCQHCAKDFASKYTLTAHLKIHSNRPRPHSCSQCSKAFFSAQNLLQHEKIHTGVKEYICDVCDKAFGTQHNLEVHKVVHTGYKPFICRTCGKAFARRAEIKDHERTHTGERPFSCDICKMSFAQRSNLTTHKRATHFNDKRYKCEQCDRSFKRRRLLDYHMRALHTGERPYVCKLCNATFVYPEHYKKHTRIHSGVKPYACEVCGKTFNSRDNRNAHRFIHSDKKPYECMVCGQGFMRKPLLYAHMQQSGHINDTIIINQPRIFKEGDETPVDDDNLIEMVADDEMVEEHLIIDGPVQFGAESESQATADESTAEENSISNEMLEDHLSEVMNSDQYVVADCSDSATMQLVQIRTKDKNGKEAYTWVNFVDEKES
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -