Ctib008672.1
Basic Information
- Insect
- Chorisops tibialis
- Gene Symbol
- -
- Assembly
- GCA_963669355.1
- Location
- OY770262.1:184871513-184879909[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 16 0.00016 0.018 16.9 5.5 1 23 238 261 238 261 0.94 2 16 0.00061 0.068 15.0 1.3 1 23 268 290 268 290 0.97 3 16 0.00027 0.031 16.1 1.9 1 23 325 347 325 347 0.97 4 16 0.002 0.22 13.4 0.1 3 23 354 375 352 375 0.89 5 16 2.3e-06 0.00025 22.7 0.8 1 23 382 404 382 404 0.98 6 16 0.0002 0.022 16.6 2.1 2 23 411 433 408 433 0.92 7 16 0.0005 0.056 15.3 1.2 1 23 440 462 440 462 0.97 8 16 3.6e-05 0.0041 18.9 5.1 1 23 468 491 468 491 0.96 9 16 0.0062 0.7 11.9 1.0 2 23 499 520 498 520 0.96 10 16 3.6e-05 0.004 18.9 1.0 1 23 525 548 525 548 0.96 11 16 5.8e-05 0.0066 18.2 0.3 1 23 556 578 556 578 0.97 12 16 3.5e-07 3.9e-05 25.2 0.7 1 23 583 606 583 606 0.97 13 16 2.2e-07 2.4e-05 25.9 0.9 1 23 613 635 613 635 0.98 14 16 0.00047 0.053 15.4 2.9 1 23 640 663 640 663 0.95 15 16 7.6e-06 0.00086 21.0 1.5 1 23 670 692 670 692 0.97 16 16 0.0062 0.7 11.9 2.4 1 23 697 720 697 720 0.93
Sequence Information
- Coding Sequence
- ATGGCTTCAATTAGAAGCTATATAGGCGAAGTTTCCAAAAACATGCATACCACTGAAATGGATGAATTTATTCAATTATTACAAAATGAAATTGAGAAAAGATTTCAGAGTTTGGAAACAAATACTTTGTTCTCACAAGCCGTATTTTTGGATCCGCGATTCAAAAAACAAGGGTTTTCAAATGAACCAGCGTTTAGAAGAACGTACGATGAAATTGCAAGCAACGCTAGCTCAGTTCCAACTGTAGCTAGTAATGAAGTCCCTGCGAGCATTGAGCCTTCTTGCAGCAAACTGTCACGACTGTGGGCCAAATTTGATACGCAAATGGAAAGCGTTCAATCACAAGAGAACCCAGTTGCAGCTGGTATTACTGAAACCGATAAATTCGTACAAGAACGCTATTTGGAAAGAACTGCCGATCCGTTAGCTTGGTGGAAAGAGCGGCAATTAATATTTCCAAGACTATTCCAAATAGCAAAACGAAGACTAAGCATCGTCGCCACATCGGTTCCATGTGAACGATCTAAGGATCTATTATTCTTCTGCCCACTATGTGCAACAGACTGGATTGGAAGTTCCTTGAATGACACGAAATCACTGAAtAAAAAGGCTCCATCATTTAAAAAGAACCTATGCTACGTTGATTTTTCATCCCGTCTATCTGACGAGCAAGAACGATTATATAAGGCCGCTAAGCTCCGGAAACATCTATACGTATGTCCGCACTGCACTAAGAAATTTTCCCGTCGTATGGATTTGTGTCATCATGTTGACATAATGCATTTAGTAGTTGACAGTAGTTATCCTTGTGATGATTGCTCCAATAAATTTACAACTAAAAATCAGCTATCACTACATCGGTTGAATCACATTGAAAAATCTCTATTTTGTTCACTATGCAGTAAGCTATACGAGACACGAATCCAATTAAAGTTTCATTGCGAAATTTTCCATTCGAACGCTGATAAGAAATTTGACTGCGAACACTGCACAGAACAGTTTATTAGCAAGGAACTTTTACGACAACATCGGAATATTCATCGCGATCTATGCGTTATATGCCCGCATTGTGAGGAATCGCTACCACGACGTCGTGATCTAAATCGACATCTTGTAGCGGTGCATGGTAATAAGGATACAAAGTTTCCGTGTTCGAAATGCcaaaaaatttttggaaatcgAGATTATTTAATGGCACATATGAAGACACATTCGGTTTCCGAATGTCCAACATGTTTACATTGCGAAAAAACCTTTGCTCTAGAAGACGATTTGCAGCGTCACATGAACCTGTTCCATACGAACGCTGATAAATTGTATCCATGTCGGCAATGTGCTCGGGTCTTTACGACAAGTCAACTACTCGAAAATCATATTCATCAACATACGAATAATCGACATCACGAATGCGAAATTTGCAAAAAGAAATTCAATCGACGGCAGCATCTCTTAAAACATATGGACCGGATACATGTGACCCGCGAAGAGATAATAACGTGCGATGTTTGTcagacaaaattcaaaaataaggaAATTCTGAGAATTCATAAGCGACTGCATACCAACAATTGCTTTATGTGTCCGATTTGTGAACTTAAGTTCGTACATCGTAGCAAATTGACAACGCACATCGAACGAGTGCACACGATCAAAGAAGACAAGAAGTACGCATGCGATGTTTGTCCGAAAGTATTCGGCAGTGATTTCAATTTGAAACGACATTATCAATTGCATGTTGGCGAATGCTACGTTTGTCCGCAATGTCCGAAGAAATTTGCGAATCGTAGCTACCTTAAAAAGCACATCACACGAGCACATAAGGAACGTGATTTGAAATTTCCCTGTTCGCTATGCGATAAGGTTTTTTCACGTAAGGAGAATCTCCGATACCATCAAAACATCCATTCGGATAATTTCTTCTTCTGTCCGTTTTGCCCGAAGAAATTCTCTCGTCGCGGCGTTCTTAATTATCACATAAAGCATATGCATACGCAACAGGACCAAGTATTTCCGTGCGATCTATGCGATAAGGTTTtcacgaaaaaagaaaatttacgaTATCATAAGAATAATCATAGCGGTATTCGTTTTGAATGTCAGATTTGTTTTAAAAGTTACACTTGCCGGAGCAGTTTGCGGAAGCATGTTGTGGTTGTTCACAACGAAAAACCCGATGATACAAATTGCAAGGAGATCGATTCGCAATACGCTAAAGGGAAAAAAACGAAATCCTAA
- Protein Sequence
- MASIRSYIGEVSKNMHTTEMDEFIQLLQNEIEKRFQSLETNTLFSQAVFLDPRFKKQGFSNEPAFRRTYDEIASNASSVPTVASNEVPASIEPSCSKLSRLWAKFDTQMESVQSQENPVAAGITETDKFVQERYLERTADPLAWWKERQLIFPRLFQIAKRRLSIVATSVPCERSKDLLFFCPLCATDWIGSSLNDTKSLNKKAPSFKKNLCYVDFSSRLSDEQERLYKAAKLRKHLYVCPHCTKKFSRRMDLCHHVDIMHLVVDSSYPCDDCSNKFTTKNQLSLHRLNHIEKSLFCSLCSKLYETRIQLKFHCEIFHSNADKKFDCEHCTEQFISKELLRQHRNIHRDLCVICPHCEESLPRRRDLNRHLVAVHGNKDTKFPCSKCQKIFGNRDYLMAHMKTHSVSECPTCLHCEKTFALEDDLQRHMNLFHTNADKLYPCRQCARVFTTSQLLENHIHQHTNNRHHECEICKKKFNRRQHLLKHMDRIHVTREEIITCDVCQTKFKNKEILRIHKRLHTNNCFMCPICELKFVHRSKLTTHIERVHTIKEDKKYACDVCPKVFGSDFNLKRHYQLHVGECYVCPQCPKKFANRSYLKKHITRAHKERDLKFPCSLCDKVFSRKENLRYHQNIHSDNFFFCPFCPKKFSRRGVLNYHIKHMHTQQDQVFPCDLCDKVFTKKENLRYHKNNHSGIRFECQICFKSYTCRSSLRKHVVVVHNEKPDDTNCKEIDSQYAKGKKTKS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -