Ctib000816.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Chorisops tibialis
Gene Symbol
-
Assembly
GCA_963669355.1
Location
OY770262.1:15136437-15138960[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 16 0.034 3.8 9.5 0.1 2 23 82 104 81 104 0.93
2 16 0.00036 0.041 15.7 1.4 2 23 109 130 108 130 0.96
3 16 0.018 2.1 10.4 0.2 1 23 247 269 247 269 0.97
4 16 1.6e-05 0.0018 20.0 1.8 1 23 293 315 293 315 0.96
5 16 1.4e-05 0.0016 20.2 1.2 1 23 387 410 387 411 0.95
6 16 0.00016 0.018 16.9 4.0 1 23 416 438 416 438 0.98
7 16 1.2e-05 0.0014 20.4 4.5 1 23 444 466 444 466 0.98
8 16 0.0039 0.44 12.5 2.7 2 23 472 493 471 493 0.97
9 16 0.016 1.7 10.6 0.2 2 23 500 522 499 522 0.95
10 16 0.0002 0.022 16.6 2.5 1 23 526 548 526 548 0.97
11 16 1.2e-05 0.0014 20.4 0.5 1 23 554 576 554 576 0.97
12 16 2.4e-07 2.7e-05 25.8 0.3 1 23 582 604 582 604 0.98
13 16 7.8e-08 8.8e-06 27.3 1.3 1 23 610 632 610 632 0.99
14 16 5.8e-05 0.0065 18.3 0.9 2 23 639 660 638 660 0.97
15 16 1.4e-06 0.00016 23.4 4.6 1 23 666 688 666 688 0.99
16 16 4.8e-07 5.4e-05 24.8 1.2 1 23 694 716 694 716 0.98

Sequence Information

Coding Sequence
ATGGATCTAGGATCTGTCGAAGCGAAAGGGCAAATCGAGATGGAAGTAGAATGTGCGGAAATCCGGCAGGCCCACTCGGATATTCGGATCGTGAAAGTGGAACCAATTGAAAGATACCTCTACGAGGAGTTGAATACTTTTCAATTCAGAAGCGACGGATTGTCGGCTACAAGTGAAAATATCCTTATCTTAGAAGCCGATCCTTTAGAGGAAATCAAGCTGGAGCCTCCGGAAACAACTTTGAAATGTTACATTTGTAGCGCCGATTTGAACACCAATAAAGATTTGCAGCAGCACATGGAAGCGGTTCATCGTAGGTCGCTGAAATGCGCGCACTGTGAGCAGTTCTTCAGTCGGAAAGGACCtttagaaaaacatttaaaagctCATCAGCCGGAAAGTGTTCAGATTCCTGAAATTCCCAGCGATCcaattttttgcattatttgtGATCTAATGATGAAGTCACAGGATGAAGTTGCGAGTCATTTGGAATCTCATGAAAACGACAGCCCCTTCGAATGTCCAGACTGTGCAGATTTGTTtgaagatataaaaatatttcaagATCACCTTAAACAACATAAAGTTAAAGCGAAGAAAATGCCTGGCAAAACGACGCGACATATTCGTGTAAATGCCTCGGACAAGACTCAATCATTTATCGAAGAATTCGAAATCACTCCGCCCGGTTCTCCTACAGAACAGAGCTTTTCTGATTACGAGCCGATTGCATCTTATCCTTGCGATCAATGTGGTAAacttttcatagacgaattaaTCCTAAAGAAGCATAAAAAAATCCACGATGAACCACCAAAATCCAAAACACCACTTCCAGTGCCACCAATCGATGTTGAGCTCGTTTCACCACCCTTCCTGTGTAATATATGCGACAGAAAATTCATCGACGAATTCAATCTGAACAAACATAAAAAGACTCACGATGAAGCTCTAATACCACAAACGGAAAACTTTTCGGTTTCGCCATCGCCTGAAACATTGCAATCGGACGTTATTGCGGAGTCACATTTATTATTTAACGAAAGTTCTTCAGAGGGAATAAATCTAAATGAACTTGAGGAAATTCTGCCCATGGAAAATGGAAATTCTCTCGATACCATAACTCACCCAAAGCCCGATATCAAAACTCGAACATTCGCTTGCAATCAGTGCGATCGATCGTTCACTCAAGCAAAAACTCTCGTGTTGCATATTCGACAAGGACATCATGGTATCAAGCCGTATAAATGCGATATTTGTCACTGGAGCTTCGGACAATCCTGCGAGCTAACCAGCCACAAGAAAATACATACGAGTCAACACCCATATAAGTGCAAACACTGCGAACAATCTTTTTCGCAAAAAcgaaatttaataaatcatTCGAAAATTCATACCAACGATTTAATCAAGTGTAAGTACTGTGGTCATGAATTTCGACTCGGCTCGAGTATGTTAAAGCATTTGAAAAGACACGAGGGTGAACAGATTTGGTCATGCCCGCATTGCGATATCCCGTATTCCGCTCCGAAATATCTAGATTTGCACGTGAAACGTATGCATACCTCTATATTTGCGTGCATGAATTGCGATAAAACTTTTACAACACAAGGATCTCGCAATCGTCACTCCCGAAAACACGCTGGCCTTTTTCCGTATCCCTGTAAAATTTGCAGTAAATCGTTTAAAGAAAAGGCACTACTACGGAGTCATCAGGTTATTCACAGAGGCAGAAAATCATTTCAGTGTAGCTATTGCGGTCAATCGTTCTCATATGCTGGGAATCTTAAAGTTCACGCTAGgaTACATACCGGCGAAAGACCGTACGAATGCAaagtttgcaaaaaaactttcgtACGAACGGCCAATCTAAACGAACACATGCGAACACATACCGGAAAGAAAGTTGTAAAATGTGAAGTTTGCGGAAAGGATTTTTCGAGTGCAACAACTTTtagtaaacataaaaaaattcatacgGGGGAACGTCCTTATAAATGCCATATTTGTGAGAAGACTTTTCGGCAAAGCATTCATTTGAGCAAGCACATTATGGTACATACCGGCGAGAAGCCTTTCCCATGTGAAATATGTGGAAGATTCTTTCGGCGAAAGGATTCGCTTAAGACTCATGTCAACAGACATCTATTGAGAAAGTCGACGAAGAAAACCGACAAGAATTTAAAAGATAAAGAAGAGAATAATGTGCAAGAAATTAAAACGGAAATTGGTAATAGTGAGAGCGAGACAATGGAAAGTGGCGACGAAAACGAAGAGAATGCAACGGAAATTTTACAGgagattaaaattgaaattgttgATGATGTGTGGTTGTAG
Protein Sequence
MDLGSVEAKGQIEMEVECAEIRQAHSDIRIVKVEPIERYLYEELNTFQFRSDGLSATSENILILEADPLEEIKLEPPETTLKCYICSADLNTNKDLQQHMEAVHRRSLKCAHCEQFFSRKGPLEKHLKAHQPESVQIPEIPSDPIFCIICDLMMKSQDEVASHLESHENDSPFECPDCADLFEDIKIFQDHLKQHKVKAKKMPGKTTRHIRVNASDKTQSFIEEFEITPPGSPTEQSFSDYEPIASYPCDQCGKLFIDELILKKHKKIHDEPPKSKTPLPVPPIDVELVSPPFLCNICDRKFIDEFNLNKHKKTHDEALIPQTENFSVSPSPETLQSDVIAESHLLFNESSSEGINLNELEEILPMENGNSLDTITHPKPDIKTRTFACNQCDRSFTQAKTLVLHIRQGHHGIKPYKCDICHWSFGQSCELTSHKKIHTSQHPYKCKHCEQSFSQKRNLINHSKIHTNDLIKCKYCGHEFRLGSSMLKHLKRHEGEQIWSCPHCDIPYSAPKYLDLHVKRMHTSIFACMNCDKTFTTQGSRNRHSRKHAGLFPYPCKICSKSFKEKALLRSHQVIHRGRKSFQCSYCGQSFSYAGNLKVHARIHTGERPYECKVCKKTFVRTANLNEHMRTHTGKKVVKCEVCGKDFSSATTFSKHKKIHTGERPYKCHICEKTFRQSIHLSKHIMVHTGEKPFPCEICGRFFRRKDSLKTHVNRHLLRKSTKKTDKNLKDKEENNVQEIKTEIGNSESETMESGDENEENATEILQEIKIEIVDDVWL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-