Ctib007152.1
Basic Information
- Insect
- Chorisops tibialis
- Gene Symbol
- zfh1
- Assembly
- GCA_963669355.1
- Location
- OY770262.1:150968082-150970214[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 20 0.2 23 7.1 0.0 1 23 13 35 13 35 0.96 2 20 0.00018 0.02 16.7 1.0 1 23 104 127 104 127 0.97 3 20 0.00021 0.023 16.5 0.9 1 23 134 156 134 156 0.97 4 20 0.0045 0.51 12.3 10.0 1 23 161 184 161 185 0.97 5 20 0.045 5 9.2 3.8 2 23 220 242 220 242 0.96 6 20 0.00043 0.048 15.5 0.9 1 23 247 269 247 269 0.98 7 20 3.2e-06 0.00036 22.2 2.4 1 23 274 297 274 297 0.97 8 20 5.4e-05 0.0061 18.3 1.1 1 23 302 324 302 324 0.96 9 20 3.1e-06 0.00035 22.2 0.3 2 23 330 352 329 352 0.97 10 20 0.0048 0.54 12.2 3.7 2 23 360 381 359 381 0.95 11 20 0.00023 0.025 16.4 3.6 1 23 386 409 386 409 0.95 12 20 1.1e-05 0.0013 20.5 0.4 1 23 416 438 416 438 0.97 13 20 0.00014 0.015 17.1 0.2 1 23 443 466 443 466 0.93 14 20 0.0023 0.26 13.2 0.1 2 23 474 495 473 495 0.97 15 20 9.1e-05 0.01 17.6 6.2 3 23 502 523 500 524 0.94 16 20 0.00048 0.054 15.4 2.6 1 22 528 549 528 552 0.90 17 20 0.00047 0.053 15.4 0.7 3 23 563 583 561 583 0.96 18 20 1.4e-05 0.0015 20.2 2.7 2 23 589 611 589 611 0.95 19 20 8.1e-05 0.0091 17.8 0.3 2 23 619 640 618 640 0.94 20 20 0.0018 0.21 13.5 7.3 1 23 645 668 645 668 0.98
Sequence Information
- Coding Sequence
- ATGCCAGACACTGAATCCGAAGCTACTGAACAAATTTATCCTTGCGACGATTGCGATTTACAAATCGAGGGCATAGCGAACCTCTTGAATCACCGAAAACTGCACTACGATTTTCATACGGTCGGAAAAGATCGGACTCACCTCACCGAATACTGTCGCACATGTCCTTTATGCATCATAAACTGGGCCACCACCGATGAAATTGCATTGAAAAGGAAACACAAACCTTTTCGATATGATGCCGAGATCGAATGTTTACTGAGCGAAACGACCTCCAAGAACCGGAACGCTTGCATGGGTAACGAGAGCTTCGAATGCCCGCAATGCGACAGGAAGTTCGCGCTAATTTACAACCTGAAAACCCACTTCAAACGGGTGCACTGCAATCAAGGCGAACAGTACGCGTGCAGGGAATGTAAAAAAGTTTTTGCCACCAAACAATATTACGAGTATCACGCCAGGATACACACGGACAAGTGTTTTCAGTGTCCGCATTGCAATAAGAAATGCGGTCATCGTAAAAATATGAACTTGCATATGAAACGGATTCATCACAAGGACACACAAGTGATCGATTGTATGCTGTGTTCGTTTGCTCTCAATTACCATAAAATGAACGCAGCACAGTGCAAAAAAACCTCAGCGACAGCGGGCAATAGTTGTCCGTTTTGTCATAAGGAGTTCCCGATCAAGGCAAACCTTAAATGCCACATCAAGCGAATGCATAGCGGTCGACAGTTCACCTGCGAAGTATGCACACgcatttttattaacgaaaccACGTTTACAATTCATAAGCGCATCCACACGAATCAATGCTACGTCTGTCCGCACTGTTCGAAAAAGTTCACTTTCAAATCGAAACTGAAAGCCCACGTCGAAACGATTCACGAAGAAATCAAATTTGCATGCGACCAGTGCCCGAAGTCATTCGCCAGCAAGGAATACCTCAAATACCACAAAACCATGCATACCGAATTCTGCGTGAAATGTGCGGAATGCGgtaaaaaattcggtcgaccgTATCAACTCGTCACTCATATGAATCGTATGCATCGAACCGATATCGAGAAATTGAATTGTGACTTCTGTCCGAAAACGTTCACCAGTAAAGATTTCCTGCGCTGCCACTTACGTTTGCATACCGGCAACGAATTCTGCTGCCAACAGTGCAATAAGAAATTCATCCGGAAATTCGATTTAACCGCTCACGTCGAACGTATGCATACGAATCCGAATCGTAACTATCCGTGCGATGTTTGCGCGAAAACTTTCCGAAGCCGAAACAACCTGAAAGAACATCAAATACTGCATACGCCGAACTGTTTCACCTGTGCCGAATGTTCGAAGAATTTCTCAACggcgaaaaaattaaatcttcaCATCGCCGCCGTTCATAAGCCGAAAGAGAAAACAGTTCCGTGCGATCAATGCGACGAAATGTTCGCTGGACGAATGGCATTGCGACTTCATAAGCGCGTGCATCGTCCGGAATTCATCAATTGTCCGCAATGCGGGAAAGTTTTCAAGAAAGAATGCCATCTTCGTCGGCACATCTCGCGTAATCATCACGACGAAGAGTATTCGTGCAGTCGTTGTCCGaaaatcttcaaaaacaaaGACAGTTTGAACTATCACGAGAAATATTTTAGGCATCTCGTTGCCGGGCAGGAGCAAATTTTAGCTTGCAGTACGTGCAAAAAAACATTTAGTTCGGAGATTACGTTGAAATTGCATGAGAAAATTCATACGGGCGAATCGCCATCGTGTCATCAATGCGAGAAACGATTCGCCCAATCTAGCGAACTCCGGAAACATATCGAACGTAATCATAACGATTCCGGACGACTTTGGAACTGTGATAGTTGCCCGAAAACATTTAAGACGGCCGATTATTTAAAAGCACATAAGATACTTCACACGGATCGGTGTTTTACGTGTGTTCATTGCGAGAAGAAATTCGTACATCGCTATTCGTTTGATCGGCATTTGAAAACGCGTCATTTACAGCAGGAAACGGTTGTTAAAACAGAGACGATAATCGACGATGACGATGTTAGCGAATTGGAATGA
- Protein Sequence
- MPDTESEATEQIYPCDDCDLQIEGIANLLNHRKLHYDFHTVGKDRTHLTEYCRTCPLCIINWATTDEIALKRKHKPFRYDAEIECLLSETTSKNRNACMGNESFECPQCDRKFALIYNLKTHFKRVHCNQGEQYACRECKKVFATKQYYEYHARIHTDKCFQCPHCNKKCGHRKNMNLHMKRIHHKDTQVIDCMLCSFALNYHKMNAAQCKKTSATAGNSCPFCHKEFPIKANLKCHIKRMHSGRQFTCEVCTRIFINETTFTIHKRIHTNQCYVCPHCSKKFTFKSKLKAHVETIHEEIKFACDQCPKSFASKEYLKYHKTMHTEFCVKCAECGKKFGRPYQLVTHMNRMHRTDIEKLNCDFCPKTFTSKDFLRCHLRLHTGNEFCCQQCNKKFIRKFDLTAHVERMHTNPNRNYPCDVCAKTFRSRNNLKEHQILHTPNCFTCAECSKNFSTAKKLNLHIAAVHKPKEKTVPCDQCDEMFAGRMALRLHKRVHRPEFINCPQCGKVFKKECHLRRHISRNHHDEEYSCSRCPKIFKNKDSLNYHEKYFRHLVAGQEQILACSTCKKTFSSEITLKLHEKIHTGESPSCHQCEKRFAQSSELRKHIERNHNDSGRLWNCDSCPKTFKTADYLKAHKILHTDRCFTCVHCEKKFVHRYSFDRHLKTRHLQQETVVKTETIIDDDDVSELE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00324625;
- 90% Identity
- -
- 80% Identity
- -