Ctib008674.1
Basic Information
- Insect
- Chorisops tibialis
- Gene Symbol
- -
- Assembly
- GCA_963669355.1
- Location
- OY770262.1:184893588-184895791[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 22 0.026 3 9.9 0.3 1 23 38 60 38 60 0.97 2 22 0.0096 1.1 11.3 1.4 2 23 66 88 65 88 0.95 3 22 0.0039 0.43 12.5 0.6 1 23 95 117 95 117 0.97 4 22 0.0019 0.22 13.5 0.2 2 23 123 145 123 145 0.95 5 22 2.7e-05 0.0031 19.3 0.8 1 23 152 174 152 174 0.98 6 22 9.7e-05 0.011 17.5 0.2 2 23 180 202 179 202 0.94 7 22 0.00031 0.035 15.9 0.6 1 23 209 231 209 231 0.97 8 22 0.0083 0.93 11.5 0.8 2 23 237 259 236 259 0.95 9 22 5.4e-05 0.0061 18.3 1.3 1 23 275 298 275 298 0.97 10 22 0.00013 0.015 17.1 0.2 3 23 306 326 305 326 0.95 11 22 0.21 23 7.1 0.0 2 23 332 354 331 354 0.90 12 22 0.0002 0.022 16.6 1.9 1 23 361 383 361 383 0.98 13 22 8e-07 9e-05 24.1 1.0 2 23 389 411 388 411 0.97 14 22 0.00012 0.014 17.3 0.5 2 23 419 440 418 440 0.97 15 22 1.7e-05 0.0019 19.9 0.8 1 23 445 468 445 468 0.96 16 22 3.4e-06 0.00038 22.1 0.8 1 23 474 496 474 496 0.97 17 22 9.6e-06 0.0011 20.7 0.9 2 23 502 524 501 524 0.96 18 22 9.6e-07 0.00011 23.9 2.2 2 23 532 553 531 553 0.97 19 22 0.00032 0.037 15.9 1.4 1 23 558 581 558 581 0.96 20 22 7.3e-07 8.2e-05 24.2 1.2 1 23 588 610 588 610 0.99 21 22 0.00016 0.018 16.8 1.2 2 23 616 638 615 638 0.94 22 22 0.29 32 6.6 0.2 1 21 646 666 646 667 0.93
Sequence Information
- Coding Sequence
- atggagaaagaATCATCAGAGAGCGATCACGTCCTATTCAGTGATGATTCAAGTTCCAGTCTAACTAGCGACCAGATAAAATGGGACGAACTAAGTAAGGAGAATCTGAAACATAAATGTGAAATTTGCTTGGAATTGTTCTCGGATTTGCCTGCATATAAAGTTCATTTGAAAGGACACACTGGAGCGTGCTTAACTTGTCCGCATTGTCCGAATAAGTTCACCCGGCAGAATCGAATGGATGAACATATCCAGCGCGTTCATCTGAAATTCTCGCAAGGCTATGCCTGCGATCAATGCGATAAGGTCTACAGCTGGAAGCAGTCACTTTTCGCACATAAGAAACTGCACGAAACCGACTGTCCATCCTGTCCGCAGTGCGATTTGAAATTCATTTCGAATGCGAAAGTCCAGGCTCATATCAAGCAAACACACGATCGCGAGGGACCGATTTTTCGATGCGAAGTTTGCCAAAAAGAATTCGCCAAAGAACGTAATCTCATCACACACAAACGTATTCATACCGACAAAAGTTTGTCATGTTTGCTTTGCGATCAAAAGTTTTCGCGTCGCAGCGCACTAAACGATCACATCGAAATAATTCATGTCAATAAGGGAAAAGGATTCATGTGTGGATTGTGCCCGAAGATGTTTTCCGGACGACAATCATTGAATCTTCATAGGAAATTGCATACTAACAAATGTTCGGTATGTACCTATTGCGGTAGTAAATTTCCAACAGCTCAAAAATTGCACGATCACGTAGAGCGATTGCACAAAAAACAGAGCGTAAATGGCCTAGAAGAACAGAAAAAACAATGCTTTGTTTGCACATATTGTTCCAAGAAATATATTCGCTTATCGAAACTGAAAGAACATATTGAAAAGGATCATGTCAATCACACCGCCAATCCGTGTGATATTTGTGAGAAGACATTCGCTAATGAAACCGACCTGAAACAACATAAGGACATTCacgaagaggagtgctctgtgTGTCCGTACTGCGAAGAGAAATTCTATTTTCCTGCAAAAATCGATGAACATTTGATCGTGGCTCATCccgacgaagaaaaaaaatacaaatgtcATGTTTGTCCAAAAGTGCTGAATACTATTCAAAATCTGAAACTCCATAAGCGATTACACAACGATCGATGCTCGGTTTGTCCGCATTGCAATCAGAAATTTGTTCGGCCGTCCCTTCTAAAGGCACACATAAAAACCTCGCATGTTGAAGCCGACGGACCGCTAACCTGTCCCGACTGCCTGCAGGTCTTCAAGCGGCCACATCTCCTCGAATTGCATAGCCGCATTCACACCGAACAATGCTTTAGTTGCGACCAATGCGATAAGCGTTTTCCGCGACGATTCAAGCTACTTAAGCATATTGCTATGGTTCACGACGAACAGAAAACGTTCATTTGCGATCAATGCCCGAAAGTATTCGCTCGACAGACCACGCTAAAATCGCATCGAAAAATTCATACAGATGATTGTTTGAAATGTCCGCATTGCGATAAGAAATTTGTCCGGCCGTACGTACTACGCGAACATATCGAACGTTCGCATGTCAATCAAAAGCAAGGCTTGAAATGCGACCATTGTCCGAAAATTTTCTCACGAAAGGACACACTTCGCATGCATTTGCGCATTCACACTGGCAACTGTTTTAAATGTTCCGATTGCGAACAACAGTTCATCCGAATGAGCGATTTGAACGAGCATCACGAACGTATCCATGTTAATCTAAATCAAGGATATAAGTGTGAGGTATGTGAGAAAGTTTTCCGGCGAAAGGACAGCTTGAAATTACATTCACGGATTCATAACAATCAGTTTTTAATTTGTCCGCATTGCGAAAAGAAATTCATTCGTTGTGCCGAATTAAATGTTCACGTCGAGAAAGTTCATAACGATAAGGAAACCGGAACGTTTGAATGCGAAGTGTGTTCGATGGTTTTCCTAAAGCGATCAAAATATCTGGTACACATACAGAAATATAATCGTGAGCATGGGTCTGATGGTTTTTTGTCGATGGGCGATGAATTAAGTAGCAGAGAATTTGGGCAGATGGACGAAATGGCAGCTCTCGGTAATTTTGATATGAGTCAAGTCGAGCAGCGCGATTCCATTTTAACGAATTAA
- Protein Sequence
- MEKESSESDHVLFSDDSSSSLTSDQIKWDELSKENLKHKCEICLELFSDLPAYKVHLKGHTGACLTCPHCPNKFTRQNRMDEHIQRVHLKFSQGYACDQCDKVYSWKQSLFAHKKLHETDCPSCPQCDLKFISNAKVQAHIKQTHDREGPIFRCEVCQKEFAKERNLITHKRIHTDKSLSCLLCDQKFSRRSALNDHIEIIHVNKGKGFMCGLCPKMFSGRQSLNLHRKLHTNKCSVCTYCGSKFPTAQKLHDHVERLHKKQSVNGLEEQKKQCFVCTYCSKKYIRLSKLKEHIEKDHVNHTANPCDICEKTFANETDLKQHKDIHEEECSVCPYCEEKFYFPAKIDEHLIVAHPDEEKKYKCHVCPKVLNTIQNLKLHKRLHNDRCSVCPHCNQKFVRPSLLKAHIKTSHVEADGPLTCPDCLQVFKRPHLLELHSRIHTEQCFSCDQCDKRFPRRFKLLKHIAMVHDEQKTFICDQCPKVFARQTTLKSHRKIHTDDCLKCPHCDKKFVRPYVLREHIERSHVNQKQGLKCDHCPKIFSRKDTLRMHLRIHTGNCFKCSDCEQQFIRMSDLNEHHERIHVNLNQGYKCEVCEKVFRRKDSLKLHSRIHNNQFLICPHCEKKFIRCAELNVHVEKVHNDKETGTFECEVCSMVFLKRSKYLVHIQKYNREHGSDGFLSMGDELSSREFGQMDEMAALGNFDMSQVEQRDSILTN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -