Ctib040289.1
Basic Information
- Insect
- Chorisops tibialis
- Gene Symbol
- -
- Assembly
- GCA_963669355.1
- Location
- OY770264.1:161263638-161264690[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1e-07 8.9e-05 23.5 0.0 1 40 18 57 18 59 0.94 2 2 4.7 4e+03 -1.0 0.0 13 22 132 141 131 142 0.88
Sequence Information
- Coding Sequence
- ATGCCTACGAAATATCACCGAAAGCCTGGAGGTGTTGCAAGACGACAATGGACAAACGAACAGTTAAATgaggcaatttcgaagataaaatctGGTGAAATAGGAGTCAATGTAGCTGCTCGAAATTACGAATTACCGTCAAGGAAACTACGTCGAAGGATGAAAACAGGAGTATTAATGGATATTCCACTGGGTCCTCAAAGAGTTTTAGGAATGGAAAATGAAAAGCGGCTAGTGAATCATATTAAGAAGCTGGAAAAAGTTGGATTCGCACCTGATAGAACTACTGTAAGGACTTTGGTGTTTCAGCTTGCCGAAAAAATAGGTATTGATCACAGATTTAATAGAGAAACTAAGATGGCTGGATACGATTGGCTTGATTCATTTCTGCGGAGAAACAAAGAATTAAGTATTAGTCAGGCAGAAGGTCTATCATTTGCACGTAGTGAACGGATGAATCGCCAAGATGCGAccgatttttttaatattcttaaatcagttttcactaaatataacatATTTGATAAGTCCTGCAACATCTTCAATATGGATGAAACCGGATTTCAGTTGAACAATGACGCTGGCGTGGTTGTAGCATCGAAGGGAGCGAGAAATGTCCACAGTATAACCTCCTGCGAACGTGGTGAAAATGTCTCGATTGTCGCATGTTGCAGTGCTGAGGGATATTTTCTTCCGCCTGCGCTAATTTTTAAAGgcgtaagagaaaaaaaagaatttggaGACGGTCTCCCTCCCGGATCAAAAGTTTATATGAACCAAAAGTCGTCGTTTATcacttctgaaatatttttcaaatggcTAAAGGAACATTTTGAACCAAGAAAACCAGCAGGCAGAAAAATCCTTATTTTAGATGGACATTCGTCCCATCAAAATTCATTCGATATGCTAAATTTTGctgaagaaaatgaaattacattGATTTGTTTACCGAGTCATACAACCCAAGCCCTGCAACCTTTGGACAGATCGTTCTTTAAGTCACTTAAGCACAATTTAAAGCAGGAGGCTAGAACATACATATGTGCTTGA
- Protein Sequence
- MPTKYHRKPGGVARRQWTNEQLNEAISKIKSGEIGVNVAARNYELPSRKLRRRMKTGVLMDIPLGPQRVLGMENEKRLVNHIKKLEKVGFAPDRTTVRTLVFQLAEKIGIDHRFNRETKMAGYDWLDSFLRRNKELSISQAEGLSFARSERMNRQDATDFFNILKSVFTKYNIFDKSCNIFNMDETGFQLNNDAGVVVASKGARNVHSITSCERGENVSIVACCSAEGYFLPPALIFKGVREKKEFGDGLPPGSKVYMNQKSSFITSEIFFKWLKEHFEPRKPAGRKILILDGHSSHQNSFDMLNFAEENEITLICLPSHTTQALQPLDRSFFKSLKHNLKQEARTYICA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00324249;
- 90% Identity
- iTF_00324249;
- 80% Identity
- -