Ctib007503.1
Basic Information
- Insect
- Chorisops tibialis
- Gene Symbol
- -
- Assembly
- GCA_963669355.1
- Location
- OY770262.1:159277737-159279089[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.1e-10 9.5e-08 33.0 0.0 1 38 18 55 18 58 0.94 2 2 4.2 3.6e+03 -0.8 0.0 13 22 132 141 131 142 0.88
Sequence Information
- Coding Sequence
- ATGCCTAAGAAATATGACCGAAAGCCTGAAGGTGTTGCAAGACGACAATGGACAAACGAACAGTTAAATgaggcaatttcgaagataaaatctGGTGAAATAGGAGTCAATGTAGCTGCTCGAAATTACGAAATACCGTCAAGGACACTACGTCGAAGGATGAAAATAGGAGTATTAATGGATATTTCACTGGGTCCTCAAAGTGTTTTAGGAATGGAAAATGAAAAGCGGCTAGTGAATCATATTAAGAAGCTGGAAAAAGTTGGATTCGCACCTGATAGAACTACTGTAAGGACTTTGGCGTTTCAGTTTGCCGAAAAAATAGGTATTGATCACAGATTTAATAGAGAAACTAAGATGGCTGGATATGATTGGCTTGATTCATTTCTGCGGAGAAACAAAGAATTAAGTATTAGGCAGGCACACGGTCTATCACTTGCACGCAGTGAAGGGATGAATCGCCAAGATGCGAccgatttttttaatattcttaaatcagttttcactaaatataacatATTTGATAAGCCCTGCAACATCTTCAATATGGATGAAACCGGATTTCAGTTGAACAATGACGCTGGCGTGGTTGTAGCATCGAAGGGAGCGAGAAATGTCCACAGTATAACCTCTTGCGAACGTGGTGAAAATGTCTCGATTGTCGCATGTTGCAGTGCTGAGGGACATTTTCTTCCGCCTGCGCTAATTTTTAAAGgcgtaagagaaaaaaaagaatttggaGACGGTCTCCCTCCCGGATCAAAAGTTTATATGAACCAAAAGTCGTCGTTTATCACTTCTGAAATGTTTTTCAAATGGCTAAAGGAACATTTTGAACCAAGAAAACCAGCAGGCAGAACAATCCTTATTTTAGATGGACATTCCTCCCATCAAAATGCATTCGATATGCTGAATTTTGctgaagaaaatgaaattacattGATTTGTTTACCGAGTCATACAACCCAAGCCCTGCAACCTTTGGACAGATCGTTCTTTAAGTCACTTAAGCACAATTTAAAGCAGGAGGCTAGAACATATGTGCTTAATAACCCGGGAAGAAAAATTTCGCGTCTTCAGGCTGGTAAGATCATTGAACAAGCATGGAATAAATCAGCATCTGTTGATATTGCTATGTCTGGCTTTAGAGCAACGGGAATATTTCCATTAAATCTAAATGCTATTCCCGATCATTTCTATTCAATTTCCGATGAAGCTCGAGATGGTCAAAACAGCGCAACTATCGCTGAGAAACCAGCCCAGACTTCTTCACAGGGAAGCCCATCAAgatatttgccaaaaattggaCCGATTCCCGTTTTAAGTACTAAATTTAGAAAAAGGAAGCAATGA
- Protein Sequence
- MPKKYDRKPEGVARRQWTNEQLNEAISKIKSGEIGVNVAARNYEIPSRTLRRRMKIGVLMDISLGPQSVLGMENEKRLVNHIKKLEKVGFAPDRTTVRTLAFQFAEKIGIDHRFNRETKMAGYDWLDSFLRRNKELSIRQAHGLSLARSEGMNRQDATDFFNILKSVFTKYNIFDKPCNIFNMDETGFQLNNDAGVVVASKGARNVHSITSCERGENVSIVACCSAEGHFLPPALIFKGVREKKEFGDGLPPGSKVYMNQKSSFITSEMFFKWLKEHFEPRKPAGRTILILDGHSSHQNAFDMLNFAEENEITLICLPSHTTQALQPLDRSFFKSLKHNLKQEARTYVLNNPGRKISRLQAGKIIEQAWNKSASVDIAMSGFRATGIFPLNLNAIPDHFYSISDEARDGQNSATIAEKPAQTSSQGSPSRYLPKIGPIPVLSTKFRKRKQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00324249;
- 90% Identity
- iTF_00324249;
- 80% Identity
- -