Ctib034114.1
Basic Information
- Insect
- Chorisops tibialis
- Gene Symbol
- -
- Assembly
- GCA_963669355.1
- Location
- OY770264.1:42942816-42944246[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.8e-11 1.6e-08 35.6 0.0 1 40 18 57 18 59 0.95 2 2 0.95 8.1e+02 1.3 0.0 13 23 132 142 130 144 0.85
Sequence Information
- Coding Sequence
- ATGCCTACGAAATATCACCGAAAGCCTAGAGGTGTTGCAAGACGAcaacggacaaacgaacagttAAATgaggcaatttcgaagataaaatctGGTAAAATAGGAGTCAATGTAGCTGCTCGAAATTACGAAATACCGTCAAGGACACTACGTCGAAGGATGAAAACAGGAGTATTAATGGATATTCCACTGGGTCCTCAAAGTGTTTTAGGAATGGAAAATGAAAATCGGCTAGTGAATCATATTAAGAAGCTGGAAAAAGTTGGATTCGCACCTGATAAAACTACTGTAAAGACTTTGGCGTTTCAGTTTGCCGAAAAAATAGGTATTGATCACAGATTTAATAGAGAAACTAAGATGGCTGGATACGATTGGCTTGATTCATTTCTGCGGAGAAACAAAGAATTAAGTATTAGGCAGGCACAAGGTCTATCACTTGCACGTAGTGAAGGGATGAATCGCCAAGATGCGAccgatttttttaatattcttaaatcagttttcactaaatataacatATTTGATAAGCCCTGCAACATCTTCAATATGGATGAAACCGGATTTCAGTTGAACAATGACGCTGGCGTGGTTGTAGCATCGAAGGGAGCGAGAAATGTCCACAGTATAACCTCTTGCGAACGTGGTGAAAATGTCTCGATTGTCGCATGTTGCAGTGCTGAGGGACATTTTCTTCCGCCTGCGCTAATTTTTAAAGgcgtaagagaaaaaaaagaatttggaGACGGTCTCCCTCCCGGATCAAAAGTTTATATGAACCAAAAGTCGTCGTTTATcacttctgaaatatttttcaaatggcTAAAGGAACATTTTGAACCAAGAAAACCAGCAGGCAGAACAATCCTTATTTTAGATGGACATTCCTCCCATCAAAATTTATTCGATATGCTGAATTTTGctgaagaaaatgaaattacattGATTTGTTTACCGAGTCATACAACCCAAGCCCTGCAACCTTTGGACAGATCGTTCTTTAAGTCACTTAAGCACAATTTAAAGCAGGACGCTAGAACATATGTGCTTAATAACCCGGGAAGAAAAATTTCGCGTCTTCAGGCTGGTAAGATCATTGGACAAGCATGGAATAAATCAGCATCTGTTGATATTACTATGTCTGGCTTTAGAGCAACGGGAATATTTCCATTAAATCCAAATGCTATTCCCGATCATTTCTATTCAATTTCCGATGCAGCTCGAGATGGTCAAAACAGCGCAACTATCGCTGAGACACCAGCCCAGACTTCTTCACAGGGAAGCCCATCAAtatatttgccaaaaattagACCGATTCCCGttttaaatactaaatttaGAAAAAGGAAGCAATCAGCGAAAGTCTTATCACCTGATAGTGTAAGGGAACGCGCAGCATCCAGCCGAAAAAGAGCTGGAAAAAAACAGCCTTAA
- Protein Sequence
- MPTKYHRKPRGVARRQRTNEQLNEAISKIKSGKIGVNVAARNYEIPSRTLRRRMKTGVLMDIPLGPQSVLGMENENRLVNHIKKLEKVGFAPDKTTVKTLAFQFAEKIGIDHRFNRETKMAGYDWLDSFLRRNKELSIRQAQGLSLARSEGMNRQDATDFFNILKSVFTKYNIFDKPCNIFNMDETGFQLNNDAGVVVASKGARNVHSITSCERGENVSIVACCSAEGHFLPPALIFKGVREKKEFGDGLPPGSKVYMNQKSSFITSEIFFKWLKEHFEPRKPAGRTILILDGHSSHQNLFDMLNFAEENEITLICLPSHTTQALQPLDRSFFKSLKHNLKQDARTYVLNNPGRKISRLQAGKIIGQAWNKSASVDITMSGFRATGIFPLNPNAIPDHFYSISDAARDGQNSATIAETPAQTSSQGSPSIYLPKIRPIPVLNTKFRKRKQSAKVLSPDSVRERAASSRKRAGKKQP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00324249;
- 90% Identity
- iTF_00324249;
- 80% Identity
- -