Basic Information

Gene Symbol
Kdm5
Assembly
GCA_963669355.1
Location
OY770265.1:6832597-6849005[-]

Transcription Factor Domain

TF Family
ARID
Domain
ARID domain
PFAM
PF01388
TF Group
Helix-turn-helix
Description
This domain is know as ARID for AT-Rich Interaction Domain [2], and also known as the BRIGHT domain [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 2 9.6e-26 7.9e-22 78.9 0.0 2 89 297 380 296 380 0.95
2 2 2.9 2.4e+04 -2.8 0.0 48 65 1263 1280 1262 1290 0.80

Sequence Information

Coding Sequence
ATGGTCTCGAAAATCGAGAAACAAAGTTTCGGTGATGTAATAATTGCGGCTGCAGCTCAAACGGCTGCAACAGCCGGAGGTGGTGGCGGCGGCGGCGGACAAAATCAAATGACGCTACAACAGCAGGCCGCAACCAAGGCGTCCGTTTCATCTGGAGCGGCTGCGGCGGCAACAACAGGATCTCCCGGTGCCGTTAGTCTATCCGCGTCGCCAATTCGATCATCGGCTGCATCGCCACCGTCCTGCCCATTGTCCGCAGCTGCTGCTGGATCCGGGCGCGTAGGATCGCCATCACCGCCCGTCCTTGTACCGCAAATTCCGatcaataatttcaataataaaaattgcGAAACAATTTCACCATCGAAAAGGACTCCTCAGCAACGGAATAGCATAACAACCACCCCCAGCGCTGTCGCTACCGATGCTGGTGGCGATTCGTCCTCGGATGAGGGCAGCAGCGAGAAGATCACAGACGATGTACCGCCACCGTTACTGCTGCCGGGCGGAGGAGGACATTCCAACAGTCCGAATTATCCACAACAGAACAGTGGGCAGAGTCCACCGCCGCCGCCGCCGCAGCATCCTTCTTTCAAGAATTTCCCGCATCAGCAGCAACAGATTCCGCCGACATCGTTTTCGCTTAATAAAAACGAAGAGTTCGGTTTTTTGAAGCCGCCCGAATGTCTCGTCTTCAAACCGAACGACGAAGAGTTCAAGAATCCGCTCGCCTACATCAGTAAGATTCGATCGGTCGCCGAAAAATACGGAATCTGTAAGATTCAACCGCCAAAGACATGGACACCACCGTTTACAGTCGACGTCGACAAACTTCGTTTCACGCCGCGCGTCCAACGTCTCAACGAGCTCGAGGCAAAGACTCGCgtcaaattgaattttctcgatcagattgcgaaattctgGGAACTGCAGGGTTCGTCATTGAAAATTCCGATGGTCGAGCGGAAAGCTCTCGACCTGTACACGCTTCATCGGATCGTTCAGGAGGAGGGCGGCATGGAGCAAACGACCAAAGAACGAAAATGGTCGAAGGTGGCGCAACGAATGGGCTATCCGGCCGGCAAAAGTGTCGGAACAATTCTGAAGGGGCACTACGAGCGTATCCTGCATCCGTTCGACATTTTCACGATCGGAAAATCGCTGGCTAACGAAACGGCCGGCGATGAGGACGACGATACGAAAACCAAACTCGAACCGGAAACAACGGACGATCAGGATTATAAACCGCACGGTATTGTATCGCGGCAGCAGATAACGCCGCCGAACGAGACGACAGCGCGACGTTCGAAACGTTTCGCCAACAGTTCGACGGCCGGCTGTGGCGTATCGAGCTACAATTACAATCACGGCGGTGGTCTGACGGTGAGCGGTGGTAGTTTGGCAACGGGACTCGGCGGACCGAATGCGTTCAGTCCCGTAAAGGACGAAATCAAGCGCGATTCGTCGAATGATCTCAGTAATTCCGGAGCGATGGTGATCGCGGGCGGCCTGATGGACTATCGGCGAACACAAATATCGGGAGCCGGACCGAAAATGGCCGGCAACAGTACGAAGAGCGGACGTAGCCGGATGGCCGGAATGAATGCGGCGGCTATTGGTGCCCTGGGCGGCGGCGTTAAGGGCAAAAAGCAAAAGGATATCGATCCGCTGGCCAAGTACATTTGCCATATCTGTAATCGCGGCGATATCGAAGAAGCGATGCTTCTCTGCGATGGATGCGACGATAGCTATCACACGTTCTGCCTGATACCGCCACTAAATGACATACCGAAGGGCGACTGGCGCTGCCCGAAATGCGTTGTCGAGGAGGTCAGCAAGCCGGTCGAGGCGTTCGGTTTCGAGCAGGCGCAGCGCGAATATACGCTGCAGCAATTCGGCGAGATGGCCGATCAGTTCAAGGCCGATTACTTTAATATGTCGGTGCATCTGGTGCCGACCGAGCTGGTCGAGCGCGAATTCTGGCGAATTGTGTCGTCGATCGATGAGGACGTGACTGTCGAGTATGGCGCCGATTTGCATACGATGGATCACGGCTCGGGCTTCCCGACGAAAAGTTCGTTGTATCTGTTGCCGGGCGATCAGGAGTATGCCGAGTCCAGTTggaatttgaataatttacCGCTGCTGGAGGAGTCGATTTTGGGGCATATTAATGCCGACATAAGCGGCATGAAGGTACCGTGGATGTACGTCGGAATGTGCTTTGCGACGTTTTGCTGGCACAACGAGGATCACTGGAGCTACTCGATTAATTACTTGCATTGGGGCGAGCCGAAAACGTGGTACGGCGTGCCGGGCTGCAAGGCCGAGGCCTTCGAGGAGACGATGAAGAGCGCAGCGCCCGAGCTGTTTCAATCGCAACCGGACCTCCTGCATCAGCTCGTCACGATTATGAATCCGAATATCTTGATGAATGCCGGGGTCCCGGTCTATCGGACGGATCAACATGCCGGCGAGTTTGTTATCACGTTTCCGCGGGCCTATCATGCTGGCTTCAATCAGGGCTATAATTTTGCCGAAGCTGTTAATTTTGCGCCGGCCGATTGGATGAAGATGGGCCGCGAATGCATCAATCACTACTCAACACTGCGACGTTTCTGTGTATTCTCGCATGACGAACTGGTCTGCAAGATGGCCCTCGATCCGGACAAATTGAATTTGGGAATTGCGACCGCTTGCTATTTGGATATGGCCGAGATGGTTGATTCGGAGAAGAAGTTGCGAAAGTCGCTTCTCGATTGGGGCGTGACAAAAGCCGAACGTTCCGCATTCGAACTGATTCCGGACGACGAGCGTCAATGCGAATCGTGCAAGACGACTTGTTTCCTTTCGGCCGTGACATGCACCTGTACAACTCTGATCGTATGCCTCCGTCATTATACGGAGCTGTGCGAATGCTCGCCGGACAAGCACACTCTAAAGTATCGCTACACGCTCGACGAGTTGCCGTTAATGTTGAAAAAACTCAAAGTCAAGGCcgaaagcttcgagaattggctATCGAAAGTCCGGGACGTTCTCGATCCGAACACTCCGACCTCGATAACGCTCGAAGAACTGCAGGAATTGGCACAGGAAGCCGAAGATAAGAAATTCCCCAGTTCGATATTGCTCGAACGTCTCAATTCGGCCGTTCTCGAGGCCGAGAAATGCGTTACCGTCATCCAACAGCTCGACATAAACAAGATGCGAACACGCACGCGTAACTCAAGCGATGCGGCCAAATACAAGCTGACCCTGGACGAATTGGAAATGTTCGTGCAGGAGATCGACAATCTGTGCTGTGTAATTCAGGAGGGACAAAGCGTTCGCGAATTGCAGGCGCTCGGCAAGGAATTTCTCGAGACGGCCAAACAGCTGCTGAGCGAGCCGATCTACAAAGTCGATGAGATGTCGATCGAGAAGATCATCGAAGAAGGTTCGACGCTCTGCATTGAATTGCCCGAAATTAAGCTGCTCAAGGATCGTTTGCAGCAAGTCAACTGGTACAATCGTGTGCGCGAGTTTCGCGATGCCCAGGAGAAAATACCGATCGTcgatattcatacttttctcaaaGAAGGCCTGACCATAGCGCCCGACGCGGTTATCGAAAAGGAACTGTACGAGCTGCAGGAGATCCTGATGAGCGTCGAGGATCTGGAGGTGGTCGCGAAACGCTGTTTCGAAAGCGACACGCAACACGAACTGCCCGAAATCGAACTGCTACTCGAACGCGCCGACGATCTCGAGGGCGAACTTCCGTCGCAGGCCGCGCTCAAAGATGCCGTGAAAAAGGCAAAAGAATGGCTACAAATCGTCGAAATTTTGCAATCGAACGAAAGCTATCCGTACTTTCATACGCTCGAGAGTCTCGTGAATCGCGGCAAGAACATTCCGTTCCAGTTGGAAGAACTGAAACGAATGGAAGAGCATCTGAGCAGCGCCCGATCATGGAAGGAACGCACCTCTCGAACATTCCTCAAGAAGCAGACCACTTTCAATTTACTCGATGTCCTGTCGCCGCGATCCGAAGCCGTCATGTACGGCTCGAAAACGAAGAAGAAATCGATGGAAGAGCAATTCACCGAAGAGATGAGTCCCGTTCAGATGGTCAATGCCTTTAAGAATTCCGAAGAGAAGGAAATTTTAGAGATCCGTCAGCTACGCAAACAGAACATGGAAAAGAATCCGACCGAGGATAAGTATTGTAAATGTAAGCGGAAATTCCAGGGCCTCATGTATCAGTGTCAGCTGTGCAAGGATTGGTTTCACGAGACGTGCGTCCCGCCGCCGAAAAATACGGTCCGGCCGCGACCCAGTAACACAACGACGCCGACGAATGCGCTCAACGTTCCGCAATTGAATACGCGCGAAAAGGATCGCGAATCGAAATATCTGTGTCAGTCGTGTATGCGATCGCGTCGGCCGCGACTCGAAACGATCCTATCGCTGTTGGTGTCGCTGCAGCGGCTGCCGATTCGTTTGCCCGAGGGCGAAGCGTTACAGTGTTTGACGGAGCGCGCCATGAATTGGCAAGATCGCGTCCGACAGGCCTTCTCGACCGAAGACGTTGTCTCCGCATTGGCCATGCTTTCGAATATCTCGCAGAAGAATAGCGCAACGTCGGCCGGAATCGATGCAAAGCTGGCCGCCGACGATGAATATGCCGCGAAGCATGCGAACAAGCGACGATCACAGACCGCAATGATTCGAACGAATACAAGCGACGACGAAATGGATACAAGTTCCGAGGACGAGGGCTTCTCGATTTCGTCGTCGTCGGCTAAAGTAGTGCTCGGACAGCACCAGCAGCAGGCAACATTAGGAAATTCCGGAGGCGATAGCTCACCGTCGTCGCCAACTAAAATCGAACATGCCTATTCCGTTCCCGTACCGCAGAATATTTCCAGCAGCGGCTGTTTTAGTAAATCGATAAGCGGCCTGGGTGCACCGCTCTCCAAAGCCGACATGCCGCTAATAACGCTAGCGAAAGCCACTCGCGAATCACTCGAACTTCTCATGATGGAAGGCGACCTAATGGAAGTTTCGCTCGACGAAACGCTTCATATTTGGCGAATTTTGAATGCAGCCAAACCATCCATATCGGATCTAGCTTACATTCATTACAAATACAAAATAACGCCACCAACAAACGAAATTCTAGTCacgagtaataaaaaaaaacgtcgcTCTGAAGAAAATTTTACATCACAACCGGCTAAGAGATCAAACAAAAATCAATTATCGACAACAAATTCAACAGTATCGACCGCAGCGCCGAGTAATGCAGGAGGTGCGACAGGCGGTCCTTCGAATATCGGCGGATCGGTATCGAAAATTAAACGTGGCCGTAAAATGAAAATGGTTACGAAAGAAACGGACGCAGCAATTACGCTACCGGTCAGTAGTTCGGCTACGAGCGGTATCGGTATGCCGGAAATTAAGAAACGTAAACGTGGAAAGAAGGCAGCTCGACAGGAACAAGTCGCAATTGCAGCTTCGACTTCCGACGACGATGAGGAGTGTAGCGCTGCGAATTGTGCTCGACCGTCTGgCCGCGAAGTCGATTGGGTTCAATGCGATGGCGGCTGCAATAAATGGTTTCACATGTATTGTGTCGGTCTCGATAAGGATCAGATCAAACCGGACGACGATTTCATATGCAAGCGATGCAAGAAGGCGGCAGCAGTTGCAAATTTTGTTGCAGCTGATTTAGCTGAGTCGGTGGCAGCAGTGGCCGAAACGACAACAGGAGAACGTTCACCCTATACCAATGAAGCGTCCGAACGAGGAGGTGGAGGAGGAGAAGAAGAAgatgcagcagcagcagcaacaacaggaGCGGCAAGTAATAGTGGACTAGCGGCATCTAATACAAAccttagtagtagtagtaacgGAGCAGGAGGAGGAGGAGAAGAAAGTGATACGATTGTGACGAGTGGTGTTGGGAAGGGCGGACGCAAGAAAGCAAACAtcgccaccaccaccaccaccaccgccACCAATTCGTCGTTATTACcgaattcaattaaaaataatagcgGTAGCAGTACAATTAGTCATAGCGgtgaaaagaaaattgattgTGATTTTgatacgaaaaataaattagaaGAAGGTGATGGCGTCGCGaacgacgatgatgatgacgagGACGACAACGGTGAGGACAACATCGACGAAACAACAGCACCAACAACGCGAAGAAGTgctgcagcagcagcagcagtgGCAGCGACAGCGACGACAACCGGCGACGTAGAAACCAACAGCAGCAGCACAACAATGTCCCAAAGTACGACAACAACACTAATTACAACTTCGATTAATTCCTCCCCGAAATCAAATCAGTCGCCGTCTCCTACAGCCACCataaatccaacaacaacaacaaataatcCTCACACGAACGATTCAGATGCAATTTCTTGA
Protein Sequence
MVSKIEKQSFGDVIIAAAAQTAATAGGGGGGGGQNQMTLQQQAATKASVSSGAAAAATTGSPGAVSLSASPIRSSAASPPSCPLSAAAAGSGRVGSPSPPVLVPQIPINNFNNKNCETISPSKRTPQQRNSITTTPSAVATDAGGDSSSDEGSSEKITDDVPPPLLLPGGGGHSNSPNYPQQNSGQSPPPPPPQHPSFKNFPHQQQQIPPTSFSLNKNEEFGFLKPPECLVFKPNDEEFKNPLAYISKIRSVAEKYGICKIQPPKTWTPPFTVDVDKLRFTPRVQRLNELEAKTRVKLNFLDQIAKFWELQGSSLKIPMVERKALDLYTLHRIVQEEGGMEQTTKERKWSKVAQRMGYPAGKSVGTILKGHYERILHPFDIFTIGKSLANETAGDEDDDTKTKLEPETTDDQDYKPHGIVSRQQITPPNETTARRSKRFANSSTAGCGVSSYNYNHGGGLTVSGGSLATGLGGPNAFSPVKDEIKRDSSNDLSNSGAMVIAGGLMDYRRTQISGAGPKMAGNSTKSGRSRMAGMNAAAIGALGGGVKGKKQKDIDPLAKYICHICNRGDIEEAMLLCDGCDDSYHTFCLIPPLNDIPKGDWRCPKCVVEEVSKPVEAFGFEQAQREYTLQQFGEMADQFKADYFNMSVHLVPTELVEREFWRIVSSIDEDVTVEYGADLHTMDHGSGFPTKSSLYLLPGDQEYAESSWNLNNLPLLEESILGHINADISGMKVPWMYVGMCFATFCWHNEDHWSYSINYLHWGEPKTWYGVPGCKAEAFEETMKSAAPELFQSQPDLLHQLVTIMNPNILMNAGVPVYRTDQHAGEFVITFPRAYHAGFNQGYNFAEAVNFAPADWMKMGRECINHYSTLRRFCVFSHDELVCKMALDPDKLNLGIATACYLDMAEMVDSEKKLRKSLLDWGVTKAERSAFELIPDDERQCESCKTTCFLSAVTCTCTTLIVCLRHYTELCECSPDKHTLKYRYTLDELPLMLKKLKVKAESFENWLSKVRDVLDPNTPTSITLEELQELAQEAEDKKFPSSILLERLNSAVLEAEKCVTVIQQLDINKMRTRTRNSSDAAKYKLTLDELEMFVQEIDNLCCVIQEGQSVRELQALGKEFLETAKQLLSEPIYKVDEMSIEKIIEEGSTLCIELPEIKLLKDRLQQVNWYNRVREFRDAQEKIPIVDIHTFLKEGLTIAPDAVIEKELYELQEILMSVEDLEVVAKRCFESDTQHELPEIELLLERADDLEGELPSQAALKDAVKKAKEWLQIVEILQSNESYPYFHTLESLVNRGKNIPFQLEELKRMEEHLSSARSWKERTSRTFLKKQTTFNLLDVLSPRSEAVMYGSKTKKKSMEEQFTEEMSPVQMVNAFKNSEEKEILEIRQLRKQNMEKNPTEDKYCKCKRKFQGLMYQCQLCKDWFHETCVPPPKNTVRPRPSNTTTPTNALNVPQLNTREKDRESKYLCQSCMRSRRPRLETILSLLVSLQRLPIRLPEGEALQCLTERAMNWQDRVRQAFSTEDVVSALAMLSNISQKNSATSAGIDAKLAADDEYAAKHANKRRSQTAMIRTNTSDDEMDTSSEDEGFSISSSSAKVVLGQHQQQATLGNSGGDSSPSSPTKIEHAYSVPVPQNISSSGCFSKSISGLGAPLSKADMPLITLAKATRESLELLMMEGDLMEVSLDETLHIWRILNAAKPSISDLAYIHYKYKITPPTNEILVTSNKKKRRSEENFTSQPAKRSNKNQLSTTNSTVSTAAPSNAGGATGGPSNIGGSVSKIKRGRKMKMVTKETDAAITLPVSSSATSGIGMPEIKKRKRGKKAARQEQVAIAASTSDDDEECSAANCARPSGREVDWVQCDGGCNKWFHMYCVGLDKDQIKPDDDFICKRCKKAAAVANFVAADLAESVAAVAETTTGERSPYTNEASERGGGGGEEEDAAAAATTGAASNSGLAASNTNLSSSSNGAGGGGEESDTIVTSGVGKGGRKKANIATTTTTTATNSSLLPNSIKNNSGSSTISHSGEKKIDCDFDTKNKLEEGDGVANDDDDDEDDNGEDNIDETTAPTTRRSAAAAAAVAATATTTGDVETNSSSTTMSQSTTTTLITTSINSSPKSNQSPSPTATINPTTTTNNPHTNDSDAIS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-