Cnem009442.1
Basic Information
- Insect
- Choreutis nemorana
- Gene Symbol
- stc
- Assembly
- GCA_949316135.1
- Location
- OX438606.1:2521785-2533228[-]
Transcription Factor Domain
- TF Family
- zf-NF-X1
- Domain
- zf-NF-X1 domain
- PFAM
- PF01422
- TF Group
- Zinc-Coordinating Group
- Description
- This domain is presumed to be a zinc binding domain. The following pattern describes the zinc finger. C-X(1-6)-H-X-C-X3-C(H/C)-X(3-4)-(H/C)-X(1-10)-C Where X can be any amino acid, and numbers in brackets indicate the number of residues. Two position can be either his or cys. This family includes Swiss:P40798, Swiss:Q12986 and Swiss:P53971. The zinc fingers in Swiss:Q12986 bind to DNA [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 16 2 2.4e+04 -4.3 1.6 15 19 486 490 485 490 0.81 2 16 0.065 7.7e+02 0.6 1.7 2 10 518 526 518 526 0.92 3 16 3.6e-05 0.43 11.0 18.1 4 19 534 549 532 549 0.93 4 16 0.11 1.3e+03 -0.1 0.6 6 11 575 580 574 581 0.88 5 16 1.4e-08 0.00017 21.9 13.6 1 19 585 603 585 603 0.97 6 16 0.00031 3.7 8.1 14.5 1 19 641 659 641 659 0.97 7 16 1.1e-05 0.13 12.7 11.1 1 19 700 722 700 722 0.88 8 16 2 2.4e+04 -5.3 2.2 6 10 752 756 752 756 0.94 9 16 0.014 1.6e+02 2.8 8.9 1 13 762 774 762 774 0.97 10 16 0.011 1.3e+02 3.1 0.5 2 10 775 783 775 783 0.94 11 16 3.5e-06 0.041 14.3 15.0 3 19 791 807 789 807 0.92 12 16 1.2 1.4e+04 -3.4 14.5 8 18 852 862 846 863 0.79 13 16 2 2.4e+04 -6.3 2.7 10 13 870 873 868 873 0.79 14 16 6.3e-08 0.00075 19.9 15.1 1 18 899 918 899 923 0.87 15 16 0.0023 28 5.3 9.7 1 19 929 952 929 952 0.87 16 16 1 1.2e+04 -3.1 0.2 8 12 968 972 968 972 0.79
Sequence Information
- Coding Sequence
- ATGTCTCAGTGGAACAATTCTTACGTTTACAACAACCAGTACAATGGTAGCAACACGTGGAATGGGGATGCAAATGGGCAATATGTGAACCAGCAGTACTATTCAACATCTCAATATCCAAACAACCAGTATGTTAATTTTTCTGAGTTCCTAACTCAAATGCAGAGTAACGGTGCAGTCCCTTCTAATCCTACCAACTATAGTAATGTTCAATATCAGAACTACCCTGTCTCCCAGTATAATTACCAATCCACACCATCTACCTCTGGAAACCAACAGGGCAACTTCACCTATGCTCctaacatacaaaatattactaGTACAGAGAATGCTTACCAGAATCCTTCCACACATCCTCAACCTAGTAGCTCACAAACAAACTCCAAATCATACAATAATGAAATAGTGCTTAAATCTAATTTGACACCAACTGCCACTGAATTTGTGCCAAAAAGTTCAACAGCACCAGCACTGCCATCTACAGTTGGTGAGTCAAATATTCAAGGAACAAGTCATACTGAACCAAGCTCTGACTACTCTAATGAACCAGCACCAAGTAGTAGCAACTCTAACAATAATCAGAGTAAATCTTCTGAAACCAACTGGAGAGAAAGATCTAGTACTTTACAGCCAAATAAGAGCACAGCATTTAgtgataacaattttaaatacaatgacTCAAGGACCAGGAATGACAATTATAGGAAACAAGATTCTAGCAGATATAAAGACAGGGAACCTAACAATTACAACACAAATAGAGGTAATTATGAATACCACGGTCGCAACCATAGAGGAAACaatgaatacaacaaaaaCTTAGACCATAAAACCCAGAGAGAATCtggtaataaacaaaatgattcCAGAAACCAAGAACACAATAATCAGGATTATGAAGCAAGCCAGGGTTATGACAATCAAAACTATTCAAACAGCAGCAATAATGACAGAGGACAATCTAAGTCTAACTATAAATCAAAAGGGAAGGATTCTATGACTTTCTACAATAGTTCAATAAGCAAGGCCAGTCAGGACTCAAGGATTGGAAGAGGAGAAAATTCCGGAAGAGGGGACAACTCTGGGAGAGGAAAGAACTGGAATGGAACTCAACGGCTAAGAGCAATGGAGCATAACAGTAATGATGATGAACAATATGCTAAGTCCTATACTAATCACGATGAAACACGATATGAAAAACCTAAAAAGGAATCAGTAGCCAGTCCTgctagaaaaaataaacattttcctGGAGACCAAACAGCAAATACAGAGATGACTCAAAGAGAGAGACTCAGTGAGCAACTGGATAAGGGTACCCTAGAATGCCTTGTTTGTTGTGAGAGAGTAAAACAGACTGACTCCGTCTGGTCCTGTTCAAATTGTTACCATGTTTTCCATCTGCGCTGCATCAGAAAGTGGGGCACAAGTAGCTTAGTTGAGGGTAAGTGGCGATGCCCTGCCTGTCAGAACACAAGTAGCGAGGTGCCTAGTGAGTACCGTTGCATGTGCGGTGCAATGAGGTCCCCAGAGTACCAACGTGGGGCAAGTGGAGCCCATACTTGCGGCAAGTCATGTGCTCGACCAAGGAGCTGTCCGCATCCCTGCACGTTACTCTGTCACCCTGGACCCTGCCCGCCTTGTCAAGCTACTATTAACAAACAATGCGGCTGTGGCGCCGAGACTCGCTCTGTGTTGTGCAGTTCTAAGTTACCTCAAGTATGTGGGCGTACTTGTCATCGCACGCTCGAGTGTGGCGTACATACGTGCACAAAAGAATGTCACGAGGGCCCATGTGATAGCTGTACTGAAACTGTCACACAAgTGTGCTACTGCACGGCGGCGCGCTCCCGCTCCGTGGCGTGCACGGGGCTCGGCGCGCGCTGGCAGTGCGGCGACGCGTGCTCGCGCGTGCTGGGCTGCGGCGCGCACGTGTGCCGCCAGCCGTGCCACGCGCCGCCCTGCCAGCGCTGCCAGCTGCTGCCGGACAACGTTGTCACCTGCCCCTGCGGGAAGAACAAATTAGATAAAGACCAACGCAAGTCGTGTACTGATCCGATCCCATTATGCGGAAACATCTGCGCGAAGCCACTGCCATGCGGGCCAATCGGCGACAGACACTTCTGCAAAATGGACTGCCATGAAGGCCCGTGCCCCGTGTGCCCCGACACCACCCTGCTCCAGTGCCGATGCGGGCACTCCAGCCGCGATGTGCCCTGCTCCGAACTACCAGAGATGCTCAACAACGTGCTCTGTCAGAAGAAATGTAATAAGAAGCTGTCGTGCGGGCGGCACCGCTGCCGCACGGAGTGctgcgcgggcggcgcgcacCGCTGCAGCGTGGTGTGCGGCCGCTCGCTGTCCTGCCAGCTGCACCGCTGCGACCAGCTGTGCCACACCGGCCACTGCGCGCCGTGCCCCATACTCAGCTGGGAGGAGGTTCGCTGTGCATGCGGCGGTACTGTAGCACTGCCCCCAGTGCGATGCGGCGCGAGAGCCCCCGCCTGCAGCCTGCCGTGCCGCGCTCCCCGCTCGTGTGGCCACCCCGCGCTGCACGCCTGCCACCCGCCGCCCTGCCCGCCCTGCGTCGTGCTCACTGCCAGGCACTGCCACGGCGGACACGAGGAAAGAAAAACTATTCCATGTTCACAAGGAGAGTTCTCATGCGGTCTACCATGCGGAAAGCCGCTGCCCTGTGGAAAACATACATGTATCAAAATCTGTCATAAGGGACCCTGTGATACAGAGAGCTGCACGCAGCCGTGCCAGGAGAAGCGCGCGTCGTGCGGGCACGCGTGCGCGGCGGCGTGCCacgcggcgggcggcggcgcgtgCCCCAGCGCCGTGCCGTGCCGCCGTGCCGTGCGCGTCACGTGCGCCTGCGGCCGCCGCGACGCCGTGCGCACGTGCCACGAGAACGCAGCCAAGGCCAGGATGCTGAGTGCGGCATTGGCGGCGACTAAGATCCAGGAAGGTGACTCTGTTGATTTGTCTGAAGCAACGCGGCCAGCTAATATGCTTAAAAcACTGGAATGCGACGACTCGTGCCGCGTGGAGGCCCGCACGCGGTCGATGGCGCTGGCGCTGCAGATCCGCAACCCCGACGTGTCAGCCAAGCTGGCGCCGAGGTACTCCGAGCATTGCCGAGCGACCGCCTTGCGCGACCCGAACCTCGCCGACCACGTGCACGAAATGCTCACACAGCTCGTGCAGCGCGCTAAGAAGTCAAAGCAGAAAACGCGTTCGCATTCGTTCCCTTCCATGAACCGCCAGAAGCGTCAGTTCATACACGAGATGTGCGAGCACTTCGGCTGCGAGAGCGTCGCATACGATGCGGAGCCGAACAGGAACGTGGTCGCAACCGCTGACAGGGAGAAGTCGTGGCTGCCGGCCATGAGCTTGATGGAGGTGGTGAACGGTCGTCGAAGAATTCCACCGCCTGCACTCCGGTGCGCTGCGCCCGCCAGCTCAAACAAATCTGGAAGTGGTTGGGCGACGTTGACGTCTACAAATGCCTGGGCGGCTCGCTCGCAGCCTCCGAAGCCGGTCGAGCCCGCCGAGCCACCCAAGATAGACTACTTCGACAACCCACCAGATAATTAA
- Protein Sequence
- MSQWNNSYVYNNQYNGSNTWNGDANGQYVNQQYYSTSQYPNNQYVNFSEFLTQMQSNGAVPSNPTNYSNVQYQNYPVSQYNYQSTPSTSGNQQGNFTYAPNIQNITSTENAYQNPSTHPQPSSSQTNSKSYNNEIVLKSNLTPTATEFVPKSSTAPALPSTVGESNIQGTSHTEPSSDYSNEPAPSSSNSNNNQSKSSETNWRERSSTLQPNKSTAFSDNNFKYNDSRTRNDNYRKQDSSRYKDREPNNYNTNRGNYEYHGRNHRGNNEYNKNLDHKTQRESGNKQNDSRNQEHNNQDYEASQGYDNQNYSNSSNNDRGQSKSNYKSKGKDSMTFYNSSISKASQDSRIGRGENSGRGDNSGRGKNWNGTQRLRAMEHNSNDDEQYAKSYTNHDETRYEKPKKESVASPARKNKHFPGDQTANTEMTQRERLSEQLDKGTLECLVCCERVKQTDSVWSCSNCYHVFHLRCIRKWGTSSLVEGKWRCPACQNTSSEVPSEYRCMCGAMRSPEYQRGASGAHTCGKSCARPRSCPHPCTLLCHPGPCPPCQATINKQCGCGAETRSVLCSSKLPQVCGRTCHRTLECGVHTCTKECHEGPCDSCTETVTQVCYCTAARSRSVACTGLGARWQCGDACSRVLGCGAHVCRQPCHAPPCQRCQLLPDNVVTCPCGKNKLDKDQRKSCTDPIPLCGNICAKPLPCGPIGDRHFCKMDCHEGPCPVCPDTTLLQCRCGHSSRDVPCSELPEMLNNVLCQKKCNKKLSCGRHRCRTECCAGGAHRCSVVCGRSLSCQLHRCDQLCHTGHCAPCPILSWEEVRCACGGTVALPPVRCGARAPACSLPCRAPRSCGHPALHACHPPPCPPCVVLTARHCHGGHEERKTIPCSQGEFSCGLPCGKPLPCGKHTCIKICHKGPCDTESCTQPCQEKRASCGHACAAACHAAGGGACPSAVPCRRAVRVTCACGRRDAVRTCHENAAKARMLSAALAATKIQEGDSVDLSEATRPANMLKTLECDDSCRVEARTRSMALALQIRNPDVSAKLAPRYSEHCRATALRDPNLADHVHEMLTQLVQRAKKSKQKTRSHSFPSMNRQKRQFIHEMCEHFGCESVAYDAEPNRNVVATADREKSWLPAMSLMEVVNGRRRIPPPALRCAAPASSNKSGSGWATLTSTNAWAARSQPPKPVEPAEPPKIDYFDNPPDN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -