Cnem017422.1
Basic Information
- Insect
- Choreutis nemorana
- Gene Symbol
- nfxl1
- Assembly
- GCA_949316135.1
- Location
- OX438618.1:1845933-1848404[-]
Transcription Factor Domain
- TF Family
- zf-NF-X1
- Domain
- zf-NF-X1 domain
- PFAM
- PF01422
- TF Group
- Zinc-Coordinating Group
- Description
- This domain is presumed to be a zinc binding domain. The following pattern describes the zinc finger. C-X(1-6)-H-X-C-X3-C(H/C)-X(3-4)-(H/C)-X(1-10)-C Where X can be any amino acid, and numbers in brackets indicate the number of residues. Two position can be either his or cys. This family includes Swiss:P40798, Swiss:Q12986 and Swiss:P53971. The zinc fingers in Swiss:Q12986 bind to DNA [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 2 2.4e+04 -7.8 5.6 15 19 134 138 133 138 0.81 2 17 0.052 6.1e+02 1.0 0.2 4 10 169 175 168 176 0.96 3 17 3.1e-07 0.0037 17.7 15.9 3 19 186 202 185 202 0.95 4 17 3.4e-06 0.04 14.3 13.9 1 19 237 255 237 255 0.93 5 17 0.85 1e+04 -2.9 1.4 5 10 279 284 279 284 0.93 6 17 1.5e-07 0.0018 18.6 13.7 1 19 290 308 290 308 0.99 7 17 4.6e-07 0.0055 17.1 19.0 3 19 345 361 337 361 0.83 8 17 6.7e-05 0.79 10.2 20.3 1 18 395 412 395 413 0.97 9 17 7.3e-09 8.7e-05 22.8 15.9 1 18 422 439 422 440 0.98 10 17 0.00026 3.1 8.3 5.9 10 19 489 498 486 498 0.92 11 17 0.00058 6.8 7.2 7.7 1 12 507 517 507 517 0.96 12 17 0.31 3.7e+03 -1.5 3.5 14 18 546 550 546 551 0.87 13 17 0.27 3.2e+03 -1.3 0.4 8 12 567 571 566 578 0.79 14 17 0.00012 1.4 9.4 4.0 1 11 587 597 587 598 0.97 15 17 0.00037 4.3 7.8 12.9 1 18 627 644 627 645 0.83 16 17 1.8 2.1e+04 -3.9 1.7 9 13 651 655 649 655 0.73 17 17 0.00075 8.9 6.8 10.3 1 15 686 699 686 706 0.89
Sequence Information
- Coding Sequence
- ATGGCTCGGAGGTATCGAGATGCTGCTGCTAAAATGCAGCAGAACGTCCAGAAACATCTAAAGGAGATGAAAGAACTTTCGTCTTCTGAAGATGAAGACCCATATGAGTCTAGCGTGTTGGAGGGCGTCTTACAGAGCTACAAGACTGGTGGTGGAGACTCAACAATGCTTACTCGGACTAAGAATCTTCTAGAAGAAGCTATAAGCGGCCGGCCGGTCACCTGTCTCATTTGTATTGGCTCTATCAGACGCTCTGATGCCCTTTGGACCTGCGACCACTGCTACTCGTACTTCCACTTCTCCTGCATATTGAAATGGGCTAACGACAGCATCAGCTTGCGTAGTGAAGAAAACCATGGGCCAATAGCTGTCTGCGTGCCAAAGAAGATTGAATGGTGTTGCCCAAAGTGCAGGAATTCATATACCAAAGAAGAAATTCCTCGAAAGTACCGTTGTTTTTGTGGTAAAGTTGATGACCCTCCAGTCCACCCCTGGTTGATACCGCATTCCTGTGGTGAAGTCTGTGGGAAGAGATTGTCTACTGGAGATAACTGCAAACACAAGTGTCTACTGCTTTGTCACCCTGGGCCCTGTCCCCCTTGCCCTCAAACCATCAACAGTGCATGCTACTGTGAGAAAGATCGTAAGAGAGTGCGGTGCAGTGCCCCAACCTGGTCTTGTGGACAGCAATGTAAAAAGGTTCTGTCTTGTAATTCACATAATTGTGAAAATCAATGCCATGAAGGTGAGTGTACACCCTGCAGCTACACCAGTCTCCAGCGGTGCCAATGTGGAGCTGAACAAGTTAGGAGACCATGTAATGATGCAAACTGGAGATGCACCAAAGTCTGTGGTAAACCATTTGGTTGTGGCTTCCATAAGTGCAAGgaaatctgtcacactggtgGCTGCGGAGAATGTCCTAACTCTGGAATGAAGTCATGCCCTTGTGGTGCAAACCAGCGGTTTGTCCAATGTCCAGACTCTATGGAAACTTGTGTGGGGACTTGCGGTAAAGTACATGAAGAATGCAATCACACCTGCCCAGAAAAATGCCATAAAGGTTCATGTCCACCTTGCCAAGTCCTTATTGAAAAGAATTGCTTGTGTTCAACCCATTCTAGGTCTCTACCCTGTAGCAAAGAATACAAATGTGACACAAAGTGCAGAGGGACTCGCCCTTGTGGCAAACATGGCTGTGGACGCAAATGCTGCAATGGAAACTGTCCTCCTTGTGAGAAAGTATGCGACAAGCCACTTCAGTGTGGCCGCCACAAGTGTACCACAGTATGCCATAGAGGGCCCTGCTATCCTTGTCACAGGGAATCTAAAATATCATGCCGTTGCAAAACAACATTCATTACTGTCCCATGCGGTAGAGAGAAACAAACTAAACCACCTAAATGCAGTCTTATCTGCAAACTTAAATACAAGTGTGGACACAGTGAAGAGAACACACATAACTGTCACTTTGGCAACTGCCCACCATGTAAAGCAATATGTTTCAAGTCTTATGAATGTGGGCACCAATGTAAGGCGGTGTGCCATGAATTTGTAGCTGTAGTATTTAAACAGGTAGAAAAACCCGCAACTCCTTGGGAAGTGAAGCCACCAGAAACTAAAATTGTAACTTTGGATTGTCCACCTTGTGAAGAACCAGTTCCTGTGGTCTGTTTTGGGGAGCATGAAACTGGAGACCAACCTTGTCATACTGCTAAGCGTAGACCATGCGGACGGAAATGTGGTAAAAAACTCTCTTGTGGTAACCATTCATGTGTCTTGATTTGTCACTTATACGCTTATGACGAAAACTATCCAAAGGTTCCATACTCTTGTGAAGAATGTAACAAGGAATGCTTAGTGCCGAGACCAGAGAGATGCTCACATAAATGTGCCAAACGGCAGTGTCATATCGGAAATTGCCCTCCATGTGAAATAATAGAAAAGGTCCCATGCCATTGTGGTATTACGGAACATTACCTACGCTGTAAAGAATTGTCAGCAGTAACTGAAGAAATGTTGTCTTGTACTCAACAGTGTCCTAAAAATTTGGAATGTGGGCATCGGTGCAAGAAAAGCTGCCACTCTGACTCATGCATAACTGGTCAAGTATGCAGCAAGAAGACTAAAGTCACATGCTCATGTGGCAACATAAAGAAAGATGTTCCATGCAATATAGCCCGAACAGAACAAACTAAGATTCCCTGCGATTCTAACTGTGaagaaaagaaacaaataGCTAGATTAGCAAAAGAAAAAGAGATACAGCGGTTGAAGGAATTGGAGGAAGAGAAAAACCGCAAAGAACTGGCTGAATATGAATGGAAGTTAAGTGGCAAAAAGAAGAAGTATAAAGAGAAAAAGGTTGTTGTTGACATGGATGATGGGGGTGtcctaaaaaaatatggcaTTCCGATAATGTCAGTTGCCATTGTAGCTGTGGCAGGGTTCTATCTACTCTCtgttgattaa
- Protein Sequence
- MARRYRDAAAKMQQNVQKHLKEMKELSSSEDEDPYESSVLEGVLQSYKTGGGDSTMLTRTKNLLEEAISGRPVTCLICIGSIRRSDALWTCDHCYSYFHFSCILKWANDSISLRSEENHGPIAVCVPKKIEWCCPKCRNSYTKEEIPRKYRCFCGKVDDPPVHPWLIPHSCGEVCGKRLSTGDNCKHKCLLLCHPGPCPPCPQTINSACYCEKDRKRVRCSAPTWSCGQQCKKVLSCNSHNCENQCHEGECTPCSYTSLQRCQCGAEQVRRPCNDANWRCTKVCGKPFGCGFHKCKEICHTGGCGECPNSGMKSCPCGANQRFVQCPDSMETCVGTCGKVHEECNHTCPEKCHKGSCPPCQVLIEKNCLCSTHSRSLPCSKEYKCDTKCRGTRPCGKHGCGRKCCNGNCPPCEKVCDKPLQCGRHKCTTVCHRGPCYPCHRESKISCRCKTTFITVPCGREKQTKPPKCSLICKLKYKCGHSEENTHNCHFGNCPPCKAICFKSYECGHQCKAVCHEFVAVVFKQVEKPATPWEVKPPETKIVTLDCPPCEEPVPVVCFGEHETGDQPCHTAKRRPCGRKCGKKLSCGNHSCVLICHLYAYDENYPKVPYSCEECNKECLVPRPERCSHKCAKRQCHIGNCPPCEIIEKVPCHCGITEHYLRCKELSAVTEEMLSCTQQCPKNLECGHRCKKSCHSDSCITGQVCSKKTKVTCSCGNIKKDVPCNIARTEQTKIPCDSNCEEKKQIARLAKEKEIQRLKELEEEKNRKELAEYEWKLSGKKKKYKEKKVVVDMDDGGVLKKYGIPIMSVAIVAVAGFYLLSVD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -