Cnem020279.1
Basic Information
- Insect
- Choreutis nemorana
- Gene Symbol
- -
- Assembly
- GCA_949316135.1
- Location
- OX438623.1:4313828-4335689[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.23 17 6.5 0.0 2 23 480 501 479 501 0.94 2 11 0.006 0.45 11.5 0.0 1 23 511 534 511 534 0.95 3 11 0.0052 0.39 11.7 1.2 2 23 701 722 700 722 0.95 4 11 0.00016 0.012 16.4 0.5 2 23 765 788 764 788 0.96 5 11 0.2 15 6.7 0.2 1 23 794 816 794 816 0.93 6 11 0.018 1.3 10.0 3.0 1 23 822 844 822 844 0.98 7 11 0.84 62 4.7 0.0 3 20 856 873 854 875 0.88 8 11 0.0063 0.47 11.4 0.3 1 23 1184 1206 1184 1206 0.98 9 11 1.9 1.4e+02 3.6 7.2 1 23 1213 1235 1213 1235 0.95 10 11 0.0013 0.096 13.6 1.8 1 23 1275 1298 1275 1298 0.95 11 11 2.9 2.2e+02 3.0 0.3 1 12 1305 1316 1305 1317 0.90
Sequence Information
- Coding Sequence
- ATGGCTGATCAATCGATACCTCTGATACTATGCATGGAGAGTGTGAATGGAGAAGAAGTGGCACTCACTGTCGAACCTGACGATGACTTCCAGAAGTTTCTGGACAACGCCAGATCACTTCTTGGATACGACATCGATTTAAACTCAATAACGAAAGACCAACCCGTCGTGCTGACTGATAACGCCTACCAATATCTTCTAAATGCCGAAAACAGTTTAGCCAACGACCAGTTACTGGCTGAGGGAATGGGGAAAAATGATGATGATCTAGTTTATATACTTGATGATGGGACGCAGATCAACGCGTCACAAATACACTTTGATAATGAAGATCCACTCATAGATTTAACAGCTGAGAAAATCCCATTCGTAAAATACGTTGATGATGGTATTGATTATGATCTGGTAGCCCCAGTTGAAGAGGTTACGAAGAAAATTGATATAGTTGAAAGTCCAGTTTCGAGATGGTCTAGAACTTCTAGTCCAAAGCGAAGTTTCGCGAATAGTCTACCTTTTAGGCTGGTAGGTAGTGGAGGATCAGGATTTGATGCTCATTTCGCGAAATACCTAGAAAATATAAGCTATTCCAACCACAACTCCATAGCTCGAAATAATTCTGCTTTAACTGGGGATAGTCTAGATCAAAAGGTAAGAAAAGATGATGGAACATTCACTCGGGAAGATATCCTCAACATGTTCAAAGATCCACCTGCAGCAACAACGAATAACAACACCAACTTTATAGAGAAACGACGGCATGTTAGGAAGACAGACCCGTCTAGGCCAGGCCATAGGAACTGGCATTCAAAACCTATTTCGTATATAGACGTTGATGGGACGATTATAGCACAGTCTGAGAACCAAGATTGCTTTGTTTGTGGGACGTACGTAGACAATAACTCTGAGAAGCTGTACTTATTTGATAATGAAGATCAGAGGCTCCATCGATCGTCCCCGCAAAAAAGACTATCCACCCAGTTGAAAATCATTTGTGAAGCATGCCTTAACGAAAACTTCAAACCGTGTAGACTGAAATCCCCTAACCAATCATTAAACCCTGACGAGTATTTGGTCATAAGGAAGAATCAACAGTATATATTTCAGAAGACGAAGAATTTCAACGCGCAAAATAGTTTGCTAGAAGCAAAAGCTATAATAGATAAAGTAGAGTCGAAGCTCAAAGGCCCGAAGGACATGGAATTTGTAAAAGTGGAGATCGGTTCAGACGGAGAAATTGTTACGAAATCTATCGATAACGACTCTGGTTCTGATGTAGTAATAGTACAAGACGAGAAGAAACGCGACAGGTCTAGTGATGTGGAGATTGTTGAGGACGATATCGACGATAGCATTATCGATAATTTGGACGATGCTGACGAACATGTCAAAGAGTTTCTAGGGAAGTACCAGAGCAATGGAAACGATGGGATAGATCTGAAATGCAGGTTCTGTGAGATAGTCTTTGAAGATCTTTCTCAAGTTATAGAGCACGGAGAGATTCATAAACACGAGACTGATGATGATAAAGTTTACCCCTGCCCTCTATGTGATTATGGTTACGCAAATTTCAAGTGGCTGAAAGGACACTTGAAGGCAGCGCAtgacaaagtcaaagtcacGAAGGATTCCGAAAAGCTAgacGACGGTGATACGAAGGAATCTCCTATAGCTAAAAGGACTAGAAGCTGTAATAAAAAAGGTGATGAATGTAAAGAAACAGCAAGCGAAGAAAATAGTGAAATCAAGGATAACACCGGACCGttaaatCTGATAATAAAGACAGAAGTGAAACAAGAATGCTTGGACGAGAGCGACGATGACGGAATATGGATAGTACAGACGGCCGAAGATGAACCGACACACAGTTTGACTGAGgATAACAATGGAGGTGGTGGTGAATACAAAAGAGCTGAAAAATGTTCAAATTGCAGtcaaataataatagctCGAGATACACCAGAAGGCCATAGGTGTAGGAGAAGCAACAAAAAACGGAAACCGTACTGCAAAGAGAACAAATCAACACCAACTTCTGACGATCTGACTAAAaaaataaaaaagaagaaacgTCCTGAAACGTCATCTGATCCGCTGATCGTCACTTGCGATGATTGCAACGAGTCATTCACGTCAAAAGTCAGACTGAAGTTTCACATGCAATTCCATGATCGCACGTCGATGCGAGGTGATGATGGAAGATACCGCTGCTGCGAATGCAAGGAGACCACCTTCGAAACTGAAACCCAGCTGTTCGACCACGTCCACTTCCAGCACCAGAAGCAGAGGATGTGGCAGTGCCCCGTGGAGAGGTGTGGGAAGAGCTTCTACCTCAGAGCAACACTGACGAAGCACAGCCGCACGCACACGGACACGCGTCGCtacgtgtgtgtgtcgtgCGGGAAGAGGTTTCTCGATAAACAGACTTTGGACGAGCATGGAGTCACTCACTTGCAGATAAAGCCGTTCCAATGCCACATCTGCATGAAGCAGCTGACCCGTCGGTCGCGCTTACGCATGCACGTCCGAGCGCACGacacgccgccgcgcgccgccTTACTGCTGGCCTGCGCGCTCTGCAGCCGCGCCTTCACAGACCGCGCGCAGGCtgagGAGCACGCTTTAAAGTCGAAATGCATCGAGACTTTTGCCGAGGGACTAAAAGTCGAGAACGACGAACCATCGGTGCAGCTGTCGCCGACCAGTGGCGTCGTCAGGCGGGCTGCACCACTGCAAGCATCAGGCGTCGGCGACCGCGCGGTGTGCGTTGGCCGCGCGGCGCCGCTGCTGGCGGGGCtgagcgccgccgccgccaatCCATGTGGTTTAATGAGACGGAATGTGTTGACAATGAGTGAGTACATGCAGTATTTGCCGCGTGTAGGCGTCGGCGACCGCGCGGTGTGCGTTGGCCGCGCGGCGCCGCTGCTGGCGGGGCtgagcgccgccgccgccaatCCATGTGGTTTAATGAGACGGAATGTGTTGACAATGAGTGAGTACATGCAGTATTTGCCGCGTGTAGGCGTCGGCGACCGCGCGGTGTGCGTTGGCCGCGCGGCGCCGCTGCTGGCGGGGCtgagcgccgccgccgccaatCCATGTGGTTTAATGAGACGGAATGTGTTGACAATGAGTGAGTACATGCAGTATTTGCCGCGTGTAGGCGTCGGCGACCGCGCGGTGTGCGTTGGCCGCGCGGCGCCGCTGCTGGCGGGGCtgagcgccgccgccgccaatCCATGTGGTTTAATGAGACGGAATGTGTTGACAATGAGTGAGTACATGCAGTATTTGCCGCGTGTAGGCGTCGGCGACCGCGCGGTGTGCGTTGGCCGCGCGGCGCCGCTGCTGGCGGGGCtgagcgccgccgccgccaatCCATGTGGTTTAATGAGACGGAATGTGTTGACAATGAGTGAGTACATGCAGTATTTGCCGCGTGTAGGCGTCGGCGACCGCGCGGTGTGCGTTGGCCGCGCGGCGCCGCTGCTGGCGGGGCtgagcgccgccgccgcctccaTCGTGCGGGTCGTCGAGATCGACATCGCCTACAGGTGCGAGTACTGCGAGGACGTGTTTTACTCTGAAGTTGGTTTGAACACCCACCGTCAGATCCACAAAGGAGTGAAGAACCCTTTCACCTGTCACATCTGTAAAGTCAGCTTTGCCACATACTCAAGATGTACTACTCACAAAACAACGCACGGTTTCTACAAGCGCTCTCTGGAGGACGCTAAGAAGTTGGCGGGGAAGTCCTCGGATGAAGGGTCCAACATCGCTAAGGGCATACTCGGATATGGGGGGTTCCCCGTCGTCAAACACTTCCTGTGTGAGgaCTGCGGCAGGTCTTACCTACATTGGACGTATCTACAGGTGCATAGACGCATGAAACACAACAACGAAAAGGTTACGCACCGCTGCAACTCTTGTGACTTGACGTTCCCTAACAGGTTGGTGAAGAATGTATATAATTTCTACAAATTCAGGTTATAA
- Protein Sequence
- MADQSIPLILCMESVNGEEVALTVEPDDDFQKFLDNARSLLGYDIDLNSITKDQPVVLTDNAYQYLLNAENSLANDQLLAEGMGKNDDDLVYILDDGTQINASQIHFDNEDPLIDLTAEKIPFVKYVDDGIDYDLVAPVEEVTKKIDIVESPVSRWSRTSSPKRSFANSLPFRLVGSGGSGFDAHFAKYLENISYSNHNSIARNNSALTGDSLDQKVRKDDGTFTREDILNMFKDPPAATTNNNTNFIEKRRHVRKTDPSRPGHRNWHSKPISYIDVDGTIIAQSENQDCFVCGTYVDNNSEKLYLFDNEDQRLHRSSPQKRLSTQLKIICEACLNENFKPCRLKSPNQSLNPDEYLVIRKNQQYIFQKTKNFNAQNSLLEAKAIIDKVESKLKGPKDMEFVKVEIGSDGEIVTKSIDNDSGSDVVIVQDEKKRDRSSDVEIVEDDIDDSIIDNLDDADEHVKEFLGKYQSNGNDGIDLKCRFCEIVFEDLSQVIEHGEIHKHETDDDKVYPCPLCDYGYANFKWLKGHLKAAHDKVKVTKDSEKLDDGDTKESPIAKRTRSCNKKGDECKETASEENSEIKDNTGPLNLIIKTEVKQECLDESDDDGIWIVQTAEDEPTHSLTEDNNGGGGEYKRAEKCSNCSQIIIARDTPEGHRCRRSNKKRKPYCKENKSTPTSDDLTKKIKKKKRPETSSDPLIVTCDDCNESFTSKVRLKFHMQFHDRTSMRGDDGRYRCCECKETTFETETQLFDHVHFQHQKQRMWQCPVERCGKSFYLRATLTKHSRTHTDTRRYVCVSCGKRFLDKQTLDEHGVTHLQIKPFQCHICMKQLTRRSRLRMHVRAHDTPPRAALLLACALCSRAFTDRAQAEEHALKSKCIETFAEGLKVENDEPSVQLSPTSGVVRRAAPLQASGVGDRAVCVGRAAPLLAGLSAAAANPCGLMRRNVLTMSEYMQYLPRVGVGDRAVCVGRAAPLLAGLSAAAANPCGLMRRNVLTMSEYMQYLPRVGVGDRAVCVGRAAPLLAGLSAAAANPCGLMRRNVLTMSEYMQYLPRVGVGDRAVCVGRAAPLLAGLSAAAANPCGLMRRNVLTMSEYMQYLPRVGVGDRAVCVGRAAPLLAGLSAAAANPCGLMRRNVLTMSEYMQYLPRVGVGDRAVCVGRAAPLLAGLSAAAASIVRVVEIDIAYRCEYCEDVFYSEVGLNTHRQIHKGVKNPFTCHICKVSFATYSRCTTHKTTHGFYKRSLEDAKKLAGKSSDEGSNIAKGILGYGGFPVVKHFLCEDCGRSYLHWTYLQVHRRMKHNNEKVTHRCNSCDLTFPNRLVKNVYNFYKFRL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -