Cnem020657.1
Basic Information
- Insect
- Choreutis nemorana
- Gene Symbol
- -
- Assembly
- GCA_949316135.1
- Location
- OX438624.1:3657791-3669835[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 29 0.0053 0.39 11.6 0.6 1 23 85 108 85 108 0.98 2 29 0.011 0.84 10.6 0.1 2 23 116 137 115 137 0.96 3 29 0.054 4 8.5 1.4 1 23 141 164 141 164 0.93 4 29 3.9 2.9e+02 2.6 6.6 1 23 171 193 171 194 0.96 5 29 9.1e-05 0.0067 17.2 0.1 1 23 197 220 197 220 0.97 6 29 4.5 3.4e+02 2.4 0.1 3 19 254 270 253 272 0.87 7 29 4.5 3.4e+02 2.4 0.1 3 19 308 324 307 326 0.87 8 29 4.5 3.4e+02 2.4 0.1 3 19 362 378 361 380 0.87 9 29 4.5 3.4e+02 2.4 0.1 3 19 416 432 415 434 0.87 10 29 4.5 3.4e+02 2.4 0.1 3 19 470 486 469 488 0.87 11 29 4.5 3.4e+02 2.4 0.1 3 19 524 540 523 542 0.87 12 29 4.5 3.4e+02 2.4 0.1 3 19 578 594 577 596 0.87 13 29 4.5 3.4e+02 2.4 0.1 3 19 632 648 631 650 0.87 14 29 4.5 3.4e+02 2.4 0.1 3 19 686 702 685 704 0.87 15 29 4.5 3.4e+02 2.4 0.1 3 19 740 756 739 758 0.87 16 29 4.5 3.4e+02 2.4 0.1 3 19 794 810 793 812 0.87 17 29 4.5 3.4e+02 2.4 0.1 3 19 848 864 847 866 0.87 18 29 4.5 3.4e+02 2.4 0.1 3 19 902 918 901 920 0.87 19 29 4.5 3.4e+02 2.4 0.1 3 19 956 972 955 974 0.87 20 29 4.5 3.4e+02 2.4 0.1 3 19 1010 1026 1009 1028 0.87 21 29 4.5 3.4e+02 2.4 0.1 3 19 1064 1080 1063 1082 0.87 22 29 4.5 3.4e+02 2.4 0.1 3 19 1118 1134 1117 1136 0.87 23 29 4.5 3.4e+02 2.4 0.1 3 19 1172 1188 1171 1190 0.87 24 29 4.5 3.4e+02 2.4 0.1 3 19 1226 1242 1225 1244 0.87 25 29 4.5 3.4e+02 2.4 0.1 3 19 1280 1296 1279 1298 0.87 26 29 4.5 3.4e+02 2.4 0.1 3 19 1334 1350 1333 1352 0.87 27 29 0.00011 0.0079 17.0 0.2 2 20 1362 1380 1362 1384 0.90 28 29 1.4e-05 0.0011 19.7 0.6 1 23 1389 1411 1389 1411 0.97 29 29 0.14 10 7.2 1.1 1 10 1420 1429 1420 1434 0.90
Sequence Information
- Coding Sequence
- ATGGACAGGTCCTTTGAATTCCTCCTGGGCAGTACAGAAGCTGAAATAGAAACCCCTCAGTGGGCTCTGAACCAAAAGAGGATCTGCGAAATCATGAAGGAAAGAGAAAGAGTCATAGTCAAATCTATGCATCCCTTGGAAACGGAAGAACCGGTGAAGAAGAGCAAAGTCAAAGCAGTTTCCATAACAAAAGAGGATGTTATGAAGGAGAGGCTAAAGATGGCAATGTCGAAAGAATATCTGAAATATCAATACAAATGTGAGAACTGCGTGGTCGGGTTCAACTTTGAAGAGAACCTTAAAGACCACGTTAAGAGAAGACATGGACCGAAAGTCGGCAGTACTACGTGCGATATTTGCCTTCAAGTGTTCTACCCGCCCGGCAGTCTGAACGCTCATTACTATAGGCATCTAACGAGATACGAGTGTGGAGAGTGCGGTAAGAGATATCCTACATTCGATGAGGGCTTCCACCATTACAACAAAGACCACCAAAGAAAGGATCCGCTGTACAAATGTCAGTTTTGCAACTACAGCACAGACTACGTGAACAAACTAAAGTACCATAGATATAAACACCACAAGAAGTTTTCGTGTAAAGAGTGCGGTGTCGTGTTAGCCTCTTCCGGTAGTCTGTGGAATCATATGAAACGCGTGCACAAGATATCCACCTACAAGTGCGTCCCGTGCGCCGTGGAATGCTCGAGCCCCGCTGCGTACGGAGCGCACGTCCGCTGCGGGTCAGCGCCGCGCGCACACTGCGCCGCCTGCGACCTCAGCTTCAGCTCCTGGCGCGCCGCACGCCTGCACGCCGCACAGTGCGCCATCACACAGTCAGTACACTATACACGTACACTACTACACTCGAGCCCCGCTGCGTACGGAGCGCACGTCCGCTGCGGGTCAGCGCCGCGCGCACACTGCGCCGCCTGCGACCTCAGCTTCAGCTCCTGGCGCGCCGCACGCCTGCACGCCGCACAGTGCGCCATCACACAGTCAGTACACTATACACGTACACTACTACACTCGAGCCCCGCTGCGTACGGAGCGCACGTCCGCTGCGGGTCAGCGCCGCGCGCACACTGCGCCGCCTGCGACCTCAGCTTCAGCTCCTGGCGCGCCGCACGCCTGCACGCCGCACAGTGCGCCATCACACAGTCAGTACACTATACACGTACACTACTACACTCGAGCCCCGCTGCGTACGGAGCGCACGTCCGCTGCGGGTCAGCGCCGCGCGCACACTGCGCCGCCTGCGACCTCAGCTTCAGCTCCTGGCGCGCCGCACGCCTGCACGCCGCACAGTGCGCCATCACACAGTCAGTACACTATACACGTACACTACTACACTCGAGCCCCGCTGCGTACGGAGCGCACGTCCGCTGCGGGTCAGCGCCGCGCGCACACTGCGCCGCCTGCGACCTCAGCTTCAGCTCCTGGCGCGCCGCACGCCTGCACGCCGCACAGTGCGCCATCACACAGTCAGTACACTATACACGTACACTACTACACTCGAGCCCCGCTGCGTACGGAGCGCACGTCCGCTGCGGGTCAGCGCCGCGCGCACACTGCGCCGCCTGCGACCTCAGCTTCAGCTCCTGGCGCGCCGCACGCCTGCACGCCGCACAGTGCGCCATCACACAGTCAGTACACTATACACGTACACTACTACACTCGAGCCCCGCTGCGTACGGAGCGCACGTCCGCTGCGGGTCAGCGCCGCGCGCACACTGCGCCGCCTGCGACCTCAGCTTCAGCTCCTGGCGCGCCGCACGCCTGCACGCCGCACAGTGCGCCATCACACAGTCAGTACACTATACACGTACACTACTACACTCGAGCCCCGCTGCGTACGGAGCGCACGTCCGCTGCGGGTCAGCGCCGCGCGCACACTGCGCCGCCTGCGACCTCAGCTTCAGCTCCTGGCGCGCCGCACGCCTGCACGCCGCACAGTGCGCCATCACACAGTCAGTACACTATACACGTACACTACTACACTCGAGCCCCGCTGCGTACGGAGCGCACGTCCGCTGCGGGTCAGCGCCGCGCGCACACTGCGCCGCCTGCGACCTCAGCTTCAGCTCCTGGCGCGCCGCACGCCTGCACGCCGCACAGTGCGCCATCACACAGTCAGTACACTATACACGTACACTACTACACTCGAGCCCCGCTGCGTACGGAGCGCACGTCCGCTGCGGGTCAGCGCCGCGCGCACACTGCGCCGCCTGCGACCTCAGCTTCAGCTCCTGGCGCGCCGCACGCCTGCACGCCGCACAGTGCGCCATCACACAGTCAGTACACTATACACGTACACTACTACACTCGAGCCCCGCTGCGTACGGAGCGCACGTCCGCTGCGGGTCAGCGCCGCGCGCACACTGCGCCGCCTGCGACCTCAGCTTCAGCTCCTGGCGCGCCGCACGCCTGCACGCCGCACAGTGCGCCATCACACAGTCAGTACACTATACACGTACACTACTACACTCGAGCCCCGCTGCGTACGGAGCGCACGTCCGCTGCGGGTCAGCGCCGCGCGCACACTGCGCCGCCTGCGACCTCAGCTTCAGCTCCTGGCGCGCCGCACGCCTGCACGCCGCACAGTGCGCCATCACACAGTCAGTACACTATACACGTACACTACTACACTCGAGCCCCGCTGCGTACGGAGCGCACGTCCGCTGCGGGTCAGCGCCGCGCGCACACTGCGCCGCCTGCGACCTCAGCTTCAGCTCCTGGCGCGCCGCACGCCTGCACGCCGCACAGTGCGCCATCACACAGTCAGTACACTATACACGTACACTACTACACTCGAGCCCCGCTGCGTACGGAGCGCACGTCCGCTGCGGGTCAGCGCCGCGCGCACACTGCGCCGCCTGCGACCTCAGCTTCAGCTCCTGGCGCGCCGCACGCCTGCACGCCGCACAGTGCGCCATCACACAGTCAGTACACTATACACGTACACTACTACACTCGAGCCCCGCTGCGTACGGAGCGCACGTCCGCTGCGGGTCAGCGCCGCGCGCACACTGCGCCGCCTGCGACCTCAGCTTCAGCTCCTGGCGCGCCGCACGCCTGCACGCCGCACAGTGCGCCATCACACAGTCAGTACACTATACACGTACACTACTACACTCGAGCCCCGCTGCGTACGGAGCGCACGTCCGCTGCGGGTCAGCGCCGCGCGCACACTGCGCCGCCTGCGACCTCAGCTTCAGCTCCTGGCGCGCCGCACGCCTGCACGCCGCACAGTGCGCCATCACACAGTCAGTACACTATACACGTACACTACTACACTCGAGCCCCGCTGCGTACGGAGCGCACGTCCGCTGCGGGTCAGCGCCGCGCGCACACTGCGCCGCCTGCGACCTCAGCTTCAGCTCCTGGCGCGCCGCACGCCTGCACGCCGCACAGTGCGCCATCACACAGTCAGTACACTATACACGTACACTACTACACTCGAGCCCCGCTGCGTACGGAGCGCACGTCCGCTGCGGGTCAGCGCCGCGCGCACACTGCGCCGCCTGCGACCTCAGCTTCAGCTCCTGGCGCGCCGCACGCCTGCACGCCGCACAGTGCGCCATCACACAGTCAGTACACTATACACGTACACTACTACACTCGAGCCCCGCTGCGTACGGAGCGCACGTCCGCTGCGGGTCAGCGCCGCGCGCACACTGCGCCGCCTGCGACCTCAGCTTCAGCTCCTGGCGCGCCGCACGCCTGCACGCCGCACAGTGCGCCATCACACAGTCAGTACACTATACACGTACACTACTACACTCGAGCCCCGCTGCGTACGGAGCGCACGTCCGCTGCGGGTCAGCGCCGCGCGCACACTGCGCCGCCTGCGACCTCAGCTTCAGCTCCTGGCGCGCCGCACGCCTGCACGCCGCACAGTGCGCCATCACACAGTCAGTACACTATACACGTACACTACTACACTCGAGCCCCGCTGCGTACGGAGCGCACGTCCGCTGCGGGTCAGCGCCGCGCGCACACTGCGCCGCCTGCGACCTCAGCTTCAGCTCCTGGCGCGCCGCACGCCTGCACGCCGCACAGTGCGCCATCACACAGTCCAATCCAAAGTGCTCGGAGTGCGGTATGGTGTTTGCGGATTCTTCACAGTTACAGCAACATGAATTTGACGCGCACCCTTCTAGAGGACACCAGTGCCCCAAGTGCCCGAGAgtatTTTCAAAGCCAAAGGAACTTGAGGAACACTTGGAATACCATAAGAGAACAGACTACGCTGACGACTACCACTGCGACTACTGCGGGAAATCTTTCTTTGTAAGTATTGATACAACAGAGTCGAGACCACCTGATCAGGCATGTGAAAGAACATATGGATAA
- Protein Sequence
- MDRSFEFLLGSTEAEIETPQWALNQKRICEIMKERERVIVKSMHPLETEEPVKKSKVKAVSITKEDVMKERLKMAMSKEYLKYQYKCENCVVGFNFEENLKDHVKRRHGPKVGSTTCDICLQVFYPPGSLNAHYYRHLTRYECGECGKRYPTFDEGFHHYNKDHQRKDPLYKCQFCNYSTDYVNKLKYHRYKHHKKFSCKECGVVLASSGSLWNHMKRVHKISTYKCVPCAVECSSPAAYGAHVRCGSAPRAHCAACDLSFSSWRAARLHAAQCAITQSVHYTRTLLHSSPAAYGAHVRCGSAPRAHCAACDLSFSSWRAARLHAAQCAITQSVHYTRTLLHSSPAAYGAHVRCGSAPRAHCAACDLSFSSWRAARLHAAQCAITQSVHYTRTLLHSSPAAYGAHVRCGSAPRAHCAACDLSFSSWRAARLHAAQCAITQSVHYTRTLLHSSPAAYGAHVRCGSAPRAHCAACDLSFSSWRAARLHAAQCAITQSVHYTRTLLHSSPAAYGAHVRCGSAPRAHCAACDLSFSSWRAARLHAAQCAITQSVHYTRTLLHSSPAAYGAHVRCGSAPRAHCAACDLSFSSWRAARLHAAQCAITQSVHYTRTLLHSSPAAYGAHVRCGSAPRAHCAACDLSFSSWRAARLHAAQCAITQSVHYTRTLLHSSPAAYGAHVRCGSAPRAHCAACDLSFSSWRAARLHAAQCAITQSVHYTRTLLHSSPAAYGAHVRCGSAPRAHCAACDLSFSSWRAARLHAAQCAITQSVHYTRTLLHSSPAAYGAHVRCGSAPRAHCAACDLSFSSWRAARLHAAQCAITQSVHYTRTLLHSSPAAYGAHVRCGSAPRAHCAACDLSFSSWRAARLHAAQCAITQSVHYTRTLLHSSPAAYGAHVRCGSAPRAHCAACDLSFSSWRAARLHAAQCAITQSVHYTRTLLHSSPAAYGAHVRCGSAPRAHCAACDLSFSSWRAARLHAAQCAITQSVHYTRTLLHSSPAAYGAHVRCGSAPRAHCAACDLSFSSWRAARLHAAQCAITQSVHYTRTLLHSSPAAYGAHVRCGSAPRAHCAACDLSFSSWRAARLHAAQCAITQSVHYTRTLLHSSPAAYGAHVRCGSAPRAHCAACDLSFSSWRAARLHAAQCAITQSVHYTRTLLHSSPAAYGAHVRCGSAPRAHCAACDLSFSSWRAARLHAAQCAITQSVHYTRTLLHSSPAAYGAHVRCGSAPRAHCAACDLSFSSWRAARLHAAQCAITQSVHYTRTLLHSSPAAYGAHVRCGSAPRAHCAACDLSFSSWRAARLHAAQCAITQSVHYTRTLLHSSPAAYGAHVRCGSAPRAHCAACDLSFSSWRAARLHAAQCAITQSNPKCSECGMVFADSSQLQQHEFDAHPSRGHQCPKCPRVFSKPKELEEHLEYHKRTDYADDYHCDYCGKSFFVSIDTTESRPPDQACERTYG
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -