Cnem018151.1
Basic Information
- Insect
- Choreutis nemorana
- Gene Symbol
- -
- Assembly
- GCA_949316135.1
- Location
- OX438619.1:3241007-3253798[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.0024 0.18 12.7 5.5 1 23 271 293 271 293 0.99 2 13 7 5.2e+02 1.8 1.0 1 23 301 324 301 324 0.90 3 13 1.5 1.1e+02 3.9 0.5 1 20 328 347 328 351 0.85 4 13 0.016 1.2 10.1 2.9 1 23 428 450 428 450 0.99 5 13 0.0013 0.098 13.5 1.1 1 23 458 481 458 481 0.97 6 13 8.4 6.3e+02 1.6 4.7 1 23 485 507 485 507 0.96 7 13 0.0016 0.12 13.3 2.6 1 23 512 535 512 535 0.98 8 13 0.015 1.1 10.2 0.6 1 23 539 562 539 562 0.95 9 13 0.13 9.7 7.3 0.2 2 21 581 600 580 605 0.91 10 13 0.067 4.9 8.2 0.2 3 23 649 670 648 670 0.98 11 13 4.5e-06 0.00033 21.3 1.2 1 23 679 701 679 701 0.98 12 13 2.5e-05 0.0019 19.0 0.7 1 23 707 729 707 729 0.97 13 13 4.8e-06 0.00035 21.2 2.6 1 23 735 758 735 758 0.98
Sequence Information
- Coding Sequence
- atgtttgacTTAAAAGCGTGTACTGTGTGCTTTAGCACTGATGTGAAACTTCATAACTTGGATAGCGATTGTTTGAGAAACGAATACAATAAAGTATCGGGCTTAAAGaCTATAAAGGGCAACGGCCTTCCCAAGTATTTGTGTGTGGAATGCTGTGCATACGTGAGACGGTCTTACAAATTCCGTTTAAAATGCCAGAGAGCCTTCTACGCTTTAcaagaaatattaaacataaacaaagaGataaaattaataaatctaaagCTATTTGACACATCCAAGATAAACATCGGTCCTAGTTTATCATTTATCGATTCTGTAAAAACATATACGGAAACATCATTTTTCCAATGGCAAAGAGTAAACAGAGGTGGTGTGAGCCAGGTTGAAGACATTCCTGTTGTTCATAATAACACATGTGACGATACCACTACAGAAGTGCCTAAAAAGAAGCAGAAAACAAACAACAGCATAAAAGAATTAGAGATAGAAATCAAGCAAGAAGCAGAGAATCCGATCAGCGAGGAGTTCGCATCCCAGTTTGAGAAGTTCCTCAGTAATCCAACAGTAGCACCCAATGatgaagatgatgatgatggtgATGATTCTTTTGACAAGGATGACAACATCAACAGTGATGATGGACATGATGGCGATGATGCCGATTTAGAGGCCCTCATCAAACCTGAAGAGCAAATCCCTGAAGTTGATGGTTCAAAGCTAGAAGAGGAATATGCTAAAATGGTTCCATTATCAATAACAGAAGCTAAAGTTGTTGTTCAGATACAAAAGCAATTTAGCAAGGGAAAGTATAAATGTACAATTTGTAGTAAAAACTATCACTCTAAAAGAAGATTAGAGACTCACACGCGAATGCATGATAAGCATATAAGTGGGAGTTATGAATGTGAGCTCTGTATATCTTACTACAAAACTGATTTCCTTCTAAAAACGCACATGACTGAGAAACACAtgtacaaatatttgtgtaaaaaatGTCCTGAAGTATCATATGACAGAACTTCTGCAAAGcaacattttgtaaatgtcCACCTACAAAAGGAGGAACGGAGCAAAAACAACACTTGGTACCAGATACGACCCAAATGGCTCACAACCAAGGGTGGAATGCCTAAACACAGAGGTGTGGTTGCTATAAAACCTAAACGGAAAATCACAAAGCTACCAGATGATTTCTTAATATACAGCCCGGTCACACAAGAAGAGCAGTATGCTTTGATCAAAGAAAGGCAGAACACAAGAAACTATAAAGAGTCTCATTTCAAATGTGAATCGTGCTACAGAGGATTCAGAGAATTTGGTACTTACAGTAACCATATGAAAAAGCATGATACGGAGGTGTCTGGTAAGTATATGTGTGATATGTGCAAGCTGTTCTTCCCATCACCTCGTAAGATGTACAAACACATGAACATCACACATCTGTTCAGATATAACTGTCAGTTGTGCTCCTTTGTATGTTATAACAGagGTCAAGCCCATATGCATTATAAATGGCATAAGAATTTCACTTACACCTGTCCGCATTGCAATATGGAGTTCAAgAAGATTTCAACTCGATTGACTCACATTCGTATTAAACATCCGTCTACATTCATTTGTACATTGTGTGGACACAGCTACGTCAGTGAGATGGGACTTGTGAGCCATAAGAAATTATCACATAGTAAAGAGGAGTTGGTAGCATTAGACAGGCCAGTTGACACTGCAAGTCTATTGTACTGCGGTGATTGTGAACTGATGTTTGCAAACGAAACTGCTTTTGCGACACATCTCACATCATCCAACAAGCACGCACATCTCAACCAGTCTTCGGTCCCTAGTCGTAAGGGTTCAATGGATGGCGCAGGCCGCCGCCCCCGAGGCCGGCCGGCTCGCGTGTCTTCTAACATAGTCAACAACGGCATGGCCACTTCTACGCTGTGCGAGATTTGTAACGAGACTTTATCAAACGATGTCCAAGCCCGCAAGCATTACCAAACGGAGCACCCCGGGACTGAATTCCTGAAACGCTACATGTGTGATGTGTGTGGACACACCACCAAGcAATACGCTAACCTGTTGGTACATATGCGTACGCATACGAATGAGAAGCCCTACGAGTGCCCGCACTGCGACAGAAGGTTCTCGATGCCTAGCAACAGAGATAGACATATTGTGGTCCACACAGGTGAGAAGAGATATCAATGCCAGCATTGCAACCGTCGGTTCACGCAGAGCAGTGCTGTAAAACTCCACATACAAACTGTCCATCTAAAGATACCGTACGCACCATGGGATAAGAAAAACAGGAAACGTCGTAAAGAACTGGAAGGTACAGCCGGCCCAGTGAGTACAATAACTAACACGAATCCAATACCCGTACAGCCGCAACCACATAAACTTCTCTTAGACGCACAAGGGGACTATCTTAACGCCTATATTACTTATAATGagtga
- Protein Sequence
- MFDLKACTVCFSTDVKLHNLDSDCLRNEYNKVSGLKTIKGNGLPKYLCVECCAYVRRSYKFRLKCQRAFYALQEILNINKEIKLINLKLFDTSKINIGPSLSFIDSVKTYTETSFFQWQRVNRGGVSQVEDIPVVHNNTCDDTTTEVPKKKQKTNNSIKELEIEIKQEAENPISEEFASQFEKFLSNPTVAPNDEDDDDGDDSFDKDDNINSDDGHDGDDADLEALIKPEEQIPEVDGSKLEEEYAKMVPLSITEAKVVVQIQKQFSKGKYKCTICSKNYHSKRRLETHTRMHDKHISGSYECELCISYYKTDFLLKTHMTEKHMYKYLCKKCPEVSYDRTSAKQHFVNVHLQKEERSKNNTWYQIRPKWLTTKGGMPKHRGVVAIKPKRKITKLPDDFLIYSPVTQEEQYALIKERQNTRNYKESHFKCESCYRGFREFGTYSNHMKKHDTEVSGKYMCDMCKLFFPSPRKMYKHMNITHLFRYNCQLCSFVCYNRGQAHMHYKWHKNFTYTCPHCNMEFKKISTRLTHIRIKHPSTFICTLCGHSYVSEMGLVSHKKLSHSKEELVALDRPVDTASLLYCGDCELMFANETAFATHLTSSNKHAHLNQSSVPSRKGSMDGAGRRPRGRPARVSSNIVNNGMATSTLCEICNETLSNDVQARKHYQTEHPGTEFLKRYMCDVCGHTTKQYANLLVHMRTHTNEKPYECPHCDRRFSMPSNRDRHIVVHTGEKRYQCQHCNRRFTQSSAVKLHIQTVHLKIPYAPWDKKNRKRRKELEGTAGPVSTITNTNPIPVQPQPHKLLLDAQGDYLNAYITYNE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -