Cnem013816.1
Basic Information
- Insect
- Choreutis nemorana
- Gene Symbol
- -
- Assembly
- GCA_949316135.1
- Location
- OX438612.1:7693492-7698781[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.0031 0.23 12.4 0.5 1 23 301 324 301 324 0.91 2 12 0.015 1.1 10.2 2.5 1 19 339 357 339 361 0.92 3 12 0.00017 0.013 16.3 3.3 2 23 367 388 366 388 0.96 4 12 0.0018 0.13 13.1 3.6 1 23 392 414 392 415 0.96 5 12 0.13 9.6 7.3 0.1 1 23 419 441 419 441 0.96 6 12 0.00089 0.066 14.1 0.2 2 23 572 593 571 593 0.95 7 12 1.8 1.3e+02 3.7 0.2 2 23 613 635 612 635 0.86 8 12 9.8e-07 7.3e-05 23.4 4.1 1 23 641 663 641 663 0.98 9 12 0.0013 0.098 13.5 1.7 2 23 669 690 668 690 0.96 10 12 7.6e-05 0.0056 17.4 1.2 2 23 697 719 696 719 0.95 11 12 3 2.3e+02 3.0 1.5 1 19 727 745 727 746 0.85 12 12 0.44 33 5.6 4.9 3 19 759 775 758 780 0.90
Sequence Information
- Coding Sequence
- ATGAACGTGGAAGGTCTTTACCCTGCGCTTCTGATACCAAAGAAGTGCACCACATTGCAATCAGAGTGCGAAGTAACCGATAACGTGTTCATCGATTTGACCATAACGTCTCGCGATACTGAGGGCAATGACATGTGCATATACTCAGGGTTTTGTAACGTGAAGCTCATTGACAGCTACAACGTGGACTACCAGTGCGATTCGCCATCCAACAGCGGCTCCATCGAGCTCATAGACACGGATAATATACCACTGAATGTCAATGACGTCAACCAAATATACCCCTTCCAATACCCAAGCCAGAACCAAGTGTGGATCGATCCTGCTAGAAGCCCCTATGTATACAATCAGTATGATGCAATTGAAGGCCAGGAGCAGTACTCCGTATACCACCAGAGTCAATCGAACCGGATTACTGTTGAGCAACACAATACTACATTTATAACTCAGaacatttacaattataatgaCTTAAGCTTGTCAGGGGGTAATGAGTTTGAGCATAAAAAGTTCAGGAAAGTTCAGGTCAAGGAATCAACCAATCAGACATCagagaataattttaatttgtatgaagAAGATGAGTTTGAGTGTGGGGTGTTCCTGTCTCAGCTTCCTAAGGAGATTATGCATGAGAAGGAGACCAAGGCCAGGGAAGAGAGGAGGTTCATAGGGTTACAGAGTGATAATGATGCTCTGAAACAGCTCATGTCGACAGGTGTACAGTCTGTGTCCAAACAACAGAAGACAATACTATTCCTTGGTCATGATTCTAATAATGGTCAAACAATACAGAAGATTGCTGTGAATGATCCAGGATTTAAATGTGCCCCTGCCAGTGAagataaaaaagcaactaagcaaacacAGTCCAGTAAAGGTCCTACAAGTCACAAAAAGTACCAGTGTGATAAGTGTAAGCAAATATTCGATCAAATAACTGAATTCAGGCAGCATATAGTTGGTAGTCACAAAGTGTCCAGCTACTTAACAGAGAAAAACACAAGTTTCTGCTACGTTTGCCAGGAATGTGGAAAGAAACTCAAAAATAAGGAGAAGTTTGAATTACACTGCTTAGGTCACGGTGACCCAGATCTAGAATGCAGTAAGTGCCACAAAGTGTTCGCTTCGAAATTCACCCTACGAACTCATAGTAAGATTCATTCTAGAAAGTATAAATGCTCTTACTGCcctaaaaactttttagataCTAGTACTTTGAGATCTCATACGGCGAAACATCACTTTTCTCATTTCTCTTGCGAAATTTGCGGTGTTGAAATAGAAAAGTACGATGAGTTCTTACAGCACAGAGAGAGCCATGACGAATTGAATCGAGATTCGAGTGAGTCTGAGATCACTGAGTCAGTAGTAGAGGATACAATTGATTTGGATATGATAACTCTTTCTCCTCCCGAAGATGTGAAGGCTGAAACGAATCCAGAGGTCGTGGTAGTGGATTATGAGAGTACATTAGACAAAGACTTCGATGAAAACACCAACGATCTCGAATTGAGCAGAGAAATTAATAACAACGAGATTGAAAGTAGTTTAGAGGATAATAAATCCACACTCGACGAAGTGAACGAGGGCGAAATAGTTGATGTCTCTGATAAAATTATGAACGCTGACTCGGTTATAGCGAAAGTAATGTCCAATGAAGTTTTTCTAATGCACACGAAGAAGTTCAAGCGACAGCGGAAATATAACAAgGTTTGCGTGGTCTGCCGGAAAATGTTCGACAGGATCGGCGATTTGAAAAGGCACCTTATCGAGCACATCATAAAGAGTACTTTGGCTAAAACTCCCGTCAGCAAGGACGGGACCCTGAAGATACAATGCGAGGTATGCCAGGTCGACACATTCACCAGGATTGACAGGTACAAAGCACATCTCCGCGAACATGCCAAACTGACACTGTACAAATGCACATTCTGCGACAAAAGTTTCTCGGATTCCAGTAACTTttcaaaacacaaaaaaattcaCGGCTCCACTTTTCTCCAGTGCGATCTCTGCCAGAGGAAATTCAACTCTAAAAAGATGATAACTCAGCACATGGAGTACCATAATAGGAACACTCCTTTGCCATGCCAATTCTGCGACAAGATATTCTATTTCCAGTCCATGTTTAACAAGCACATGAAGTATGCCCATATAAAGGCCCCCGCCCCTAAATTCAAGTGTCAGTTCTGTGATAATTATTTCAAGTCACTGAAGGAGAAGTGGGACCATGAGTGGAGTGTTCACAATGTAAGGAAGATGATCGCGGATTGTTTGATCTGTCATTCGAAATTCAGGAAATATTCCGAACTAAAACGCCACTGCAGTTCCGtacataataaagaaataccGCCGGCGAAAAATATGCTTAAAAAGTATCAGTAG
- Protein Sequence
- MNVEGLYPALLIPKKCTTLQSECEVTDNVFIDLTITSRDTEGNDMCIYSGFCNVKLIDSYNVDYQCDSPSNSGSIELIDTDNIPLNVNDVNQIYPFQYPSQNQVWIDPARSPYVYNQYDAIEGQEQYSVYHQSQSNRITVEQHNTTFITQNIYNYNDLSLSGGNEFEHKKFRKVQVKESTNQTSENNFNLYEEDEFECGVFLSQLPKEIMHEKETKAREERRFIGLQSDNDALKQLMSTGVQSVSKQQKTILFLGHDSNNGQTIQKIAVNDPGFKCAPASEDKKATKQTQSSKGPTSHKKYQCDKCKQIFDQITEFRQHIVGSHKVSSYLTEKNTSFCYVCQECGKKLKNKEKFELHCLGHGDPDLECSKCHKVFASKFTLRTHSKIHSRKYKCSYCPKNFLDTSTLRSHTAKHHFSHFSCEICGVEIEKYDEFLQHRESHDELNRDSSESEITESVVEDTIDLDMITLSPPEDVKAETNPEVVVVDYESTLDKDFDENTNDLELSREINNNEIESSLEDNKSTLDEVNEGEIVDVSDKIMNADSVIAKVMSNEVFLMHTKKFKRQRKYNKVCVVCRKMFDRIGDLKRHLIEHIIKSTLAKTPVSKDGTLKIQCEVCQVDTFTRIDRYKAHLREHAKLTLYKCTFCDKSFSDSSNFSKHKKIHGSTFLQCDLCQRKFNSKKMITQHMEYHNRNTPLPCQFCDKIFYFQSMFNKHMKYAHIKAPAPKFKCQFCDNYFKSLKEKWDHEWSVHNVRKMIADCLICHSKFRKYSELKRHCSSVHNKEIPPAKNMLKKYQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -