Cnem008440.1
Basic Information
- Insect
- Choreutis nemorana
- Gene Symbol
- znf711
- Assembly
- GCA_949316135.1
- Location
- OX438604.1:9023479-9034686[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 2 1.5e+02 3.5 0.3 2 23 6 27 5 27 0.96 2 13 0.044 3.3 8.8 0.8 1 23 987 1010 987 1010 0.93 3 13 0.00047 0.035 14.9 0.4 2 23 1108 1129 1107 1129 0.96 4 13 0.012 0.9 10.5 1.0 1 23 1135 1157 1135 1157 0.98 5 13 0.015 1.1 10.2 3.0 2 23 1164 1185 1163 1186 0.95 6 13 0.42 31 5.7 0.6 5 23 1199 1217 1198 1217 0.96 7 13 0.0056 0.42 11.6 1.3 3 23 1224 1245 1223 1245 0.97 8 13 0.0044 0.32 11.9 0.2 2 23 1261 1281 1260 1281 0.96 9 13 0.00011 0.0078 17.0 2.6 1 20 1287 1306 1287 1309 0.92 10 13 0.00035 0.026 15.4 0.4 1 23 1317 1339 1317 1339 0.98 11 13 0.0051 0.38 11.7 7.2 1 23 1345 1367 1345 1367 0.98 12 13 5.9e-06 0.00044 20.9 1.3 1 23 1373 1397 1373 1397 0.98 13 13 0.00038 0.028 15.2 5.7 1 23 1403 1425 1403 1426 0.96
Sequence Information
- Coding Sequence
- ATGGAACAGCTGGTGCAATGTCCCGTGTGTACGCTGTACCTGCACAATGGCATGTCCTTAGAAAACCACCTGGACACGCATCCTAAAGACCAGGTCATTAAAGCGTTATGCAACCTTTCCACCAATACTACCACATACAGCAGTCGAACATCGACACCAACGCAATCTGAGAGGTCTTACAGAAGCAGGTCTAGAACTCCTGCAACAGAAGACAGTCAGAGGTGGAGTAGTTCCCATAGGAGCAGCGAGCATGAGAGATACTGGAGAAGGACCCCTAAATCTACACCTGCCTCAAACCCTTCCCGAAGCTGTAACACTCCCTCTGATAGACTGTctgatattaattttgaaaataattcaacTAGTACACCATGTCAGTATCCAGGGGTACAATACCCAATTAAAACAGACAGGATGCAACAAACATATGTCTCATCCCCTGTAGCTGATTATGACCAGCCAGCCATGTATTACCCGGAGCAGCAAGAGGATAGAGAGATCAAGTATTCTCGTAGTGCTGAGTACAAGTCTATTGATGCCTCTAATAACATATTTGCATACAACATGCCTTCAATAGCACCTGGTGTGAAAGTTCAAACAACCCTGTTACCAACCATGTCTAGAAGAAGTAATGATGGTGTTAAATTAATGCCTAAAACTAACAATATATTAGTAAAGACCAATATTGGAGGTGTCCAGTACCTGCCTCCTGGAGTGAAGCCTATGCATATGATGGTTCCGTCAGCTCCAACCTTTGTTCAGAAGAATGTCCAGAATAACATGATAATGACCAGCGGATTACAAACACCTCAATTGCTAGACCCAAAGTCTGTAGTTACACCTATGACCAACCAGTTCAGTCAGATTTCTTCAGGTCCATTCACCCCTGGCACTACAGTTGTCACACAAAATTCTCAAATTATTTACAGAGAGATGGTCCACAATATAGATGGGAAACCTTTTATTACAAGCATGCCTGCAGTTCTTGGTAACCATGACAATGACCCAAGTTTGTCACACACCAGTTCTCTGTACCAGAATGTTATGGTAGTTGACCAGTTTGGGAACACATCTTGTATGTACACTGCTCCGCAAATGATGCCAAAACCTTGCAACCAACTTCCAATATACACAGACAACATTCCTAATCCTCAATTAGATAAAACTGTTAATGATAACAAGACCCTGATTATCGAAGTAGGTCCTATAATGCCTCAGTCAATGGATACAACAAGCCAGTCTAGTATATACCCTCATTCCTCTCCTGCATCATTCACCTCCCATTCATCTTCAGTAACTACCAAGTCCAGTAAGAGTAGCTTGTGTACAATTGAAAagattgaaacaaaaatagagACTCCGGGTTCAACAAAGggtcttaaaattttaagcaatattaaaGTTGAGGTCCCTGTGCAGCATCACAAGAACCTTCTAAATACGGTTGTGGATTTGACTGGAACAAATGAAGCTGAGTACAAAGATTTGAGCAAGCAGGAAAGGCCGATGTCACCTGATGAAATCTTGCCTGACTTGGATAGTCAGACCACTTTAGATGACTCCACCCAGCCATCTACATCTAGTACAGACAGCTTAGTTTCAAATGCATTTTCAGTGATAAAGAATGTTGGTAACCCACCAAGTTATAAAGACTCATCAACTAAAATGAGCTTAGTAGATAGTAAATCGGAATCGGAATATTCCGATAGTCCTGTGCCAGACCTCATATGTAATGAGAAACCTTCAATTTCACCTTGCAGTGAACTCTCAGAGAGTGGAGAAAACTCTACCGATCGTACTTCAATTTCACCCAAACTAGAGAAAGTAGACACTCCACAAATAAGTCCTGCAAAGCGAAAAAAGTCTTCTTCAATAGAAAGAAAGTATCCATCACCACCTAAAACCAATAGAAATAATTTGCTAAGACTGAACAACATATTTGTGAAGAAACATAAGAAAGTATTACAGATTAAGAATTTTAAGCCTGCATCAAGTATCCCTGATGCTATCACACCCAAAACTGAAATCGAACCGATACCCTCTTCCTCATCCTGTCGGTCCCCTGAGAATTTTACTATGAATTCCAACTATTATAATGAGAACTTGGAGATGAAGGATAAATCCGTTACTCTTCAGACGATGTCGGTAGAAATGCTTAATGCGAGCCACGACAATGAGTTTGATGCTGATACCGAGGAGCAGTCAATGGACATTGAGCCGTCGCGGACTCCTCCCGGTCCGCAGCTTCCATATACCAGCGCAAGTTCCGTACAAATCAAGGAGGAGATCAATTCAAGTAACGAGGGAGGTTTCGGTGACGACGCGCTGAGCTCGGCGCGGGACCTGACGCCGTTGGAGTCCATACGGCCTATCAACGTGATATCGTACGGGAACATGAGCGCTGGGGACTTCGAGGACGAATCCAACCATCGCGAGTTGCTGGACCTGGAGGCGGCATCTAAGAGCAAGCAGTTCGTCAACATGATGAACGACAACTACTTCGGCGACAATATCTATACGGACTACTTCACGCCGGACAGGGTGGAGGCGTTCGACGCGGACCGACAGGGCGCAACAAAGGACGGGGTGTACATCTGGGGAGAGCCATCCCAGAAAGTGGAGAATGAGTTTGTTCTGCCTAACTTTATCGAGGAGGGGTACAAGATGGCGGAGGCTGGCAGCGGCGGGGCGGGGCCGCGGACGAGCGCCATGAGCGACTCGGAGCCCGCGCTGAACATCTGCGCGGACGAGCGGATGCCGCCGCGCGGGGAGCTCAGCGGACAAGAGAGCAACGGCGACATGGAATCAGCTTGGACTAGgATGTACGCGGAGGACGCACCGGCAGAGCCTTACGATCTGATCGCGCGAGAGAGCTGGATATCCGACGGCTCTGAAGCGGACGTCAATGAGAAAAGAGACAACTTGCAAGAAGAGCCGCCAGTGGCTAAGGCTCGCGTACACACATGCGGGCAATGCGGCGCTAAGCTGTCTTCGTTACGCGAGCTACGTTCTCATAGAACGCTGGTCCACGCTCCCTCTACAAGCCGCACTTACAGTAAGCTCGTCACACAGCGCACCATCAAGAAGGAAGTCAAGACTGACGACGCGCCCATCGCTGaAACCCTAATAGATTCAAAAGAGTCGATAGCGACTAGCATCTTGCAAGAATGTGACGCTATACCTGATGCCAAGCCGAAGATCGAGGGCATCGTGAAGCAGGAAGCCAAGAGAAGACCACGCAAAGATCACGTGTGCCCTACCTGCAAGGTAGACCAGGGCTCAGATGCTGCCTTCCACGCCCACCTTAAGATACACCCCTTGGAGTGCCTCACATGCGGGAAGCTGTTCTTCAGAAGAGCAAATCTCGCCCTTCACGTTAAAACTCATCtaggaataaaaaattacaaATGTGAAGTGTGCGAGAAACGGTTCCTGACGCGTCAGAAGATGATGGAACATCTCAACGTTCACACCGGACGTACTCCTGTCAAATGCACGCTATGTGACGATACCTTCAAACGATACTCCAATATGGTGCAGCATAGGGACCGGCACCACCTGCAGAAGAAGGCCAAGGTCCGCGACTACCTGTGCGGCTGCGGGCTGGTGTTCCACTCGCGCGCGCGGCTGCGCTGGCACGCCGAGACGCACGCCGCCCGCCCGCGCGCCTGCTCCTACTGCAGCGACAAGTTCGTGCACGCCGCCTCGCTCACGCGCCACGTGCGCCGCAACCACAACCAGTACTACCTCTCGCACCGCCACAAGCCCGCCGACAACGTGCCCTGCGTCGTCTGCAAGCAGGTGTATCTCCGCTCCAACCTGCGAGCTCACATGCAGACACACAGCGGCAAGCGGCCGTACCACTGCGTGATCTGCAACAAATCCTTCACCACCAAGTGGAATCTCAAGCTGCACCGCTGGACGCACATGAGTCGCTCCTCCAAGCCTTACAAGTGCACCCTTTGCAAAGGCGCCTTCATCCGCCAGTCAGAATACGTATCGCATATGAACGcgcacaaatccgttagaccCTACACCTGCAACTACTGTGGCTGCCAGTTCATAAGGAAGTACAACTGTCAAAGGCATGTCAGGGAGCACGAGATGGGTAAGAAATACGTGTGCAAGGTGCCAGAGTGTGGGAAGTCCTTCCATAGGAGTTACTACCTGTCCGAGCATATGAAAGTCCACAGCGGCGCTCGACCCTTCTCCTGCAACATCTGCGGGAAGACAACAAGCAATAAGTCGAATCATAATAAGCATCTGAAGATCCACCACGCGCGGGAACCTGTAGCCACTGAGGCGTAG
- Protein Sequence
- MEQLVQCPVCTLYLHNGMSLENHLDTHPKDQVIKALCNLSTNTTTYSSRTSTPTQSERSYRSRSRTPATEDSQRWSSSHRSSEHERYWRRTPKSTPASNPSRSCNTPSDRLSDINFENNSTSTPCQYPGVQYPIKTDRMQQTYVSSPVADYDQPAMYYPEQQEDREIKYSRSAEYKSIDASNNIFAYNMPSIAPGVKVQTTLLPTMSRRSNDGVKLMPKTNNILVKTNIGGVQYLPPGVKPMHMMVPSAPTFVQKNVQNNMIMTSGLQTPQLLDPKSVVTPMTNQFSQISSGPFTPGTTVVTQNSQIIYREMVHNIDGKPFITSMPAVLGNHDNDPSLSHTSSLYQNVMVVDQFGNTSCMYTAPQMMPKPCNQLPIYTDNIPNPQLDKTVNDNKTLIIEVGPIMPQSMDTTSQSSIYPHSSPASFTSHSSSVTTKSSKSSLCTIEKIETKIETPGSTKGLKILSNIKVEVPVQHHKNLLNTVVDLTGTNEAEYKDLSKQERPMSPDEILPDLDSQTTLDDSTQPSTSSTDSLVSNAFSVIKNVGNPPSYKDSSTKMSLVDSKSESEYSDSPVPDLICNEKPSISPCSELSESGENSTDRTSISPKLEKVDTPQISPAKRKKSSSIERKYPSPPKTNRNNLLRLNNIFVKKHKKVLQIKNFKPASSIPDAITPKTEIEPIPSSSSCRSPENFTMNSNYYNENLEMKDKSVTLQTMSVEMLNASHDNEFDADTEEQSMDIEPSRTPPGPQLPYTSASSVQIKEEINSSNEGGFGDDALSSARDLTPLESIRPINVISYGNMSAGDFEDESNHRELLDLEAASKSKQFVNMMNDNYFGDNIYTDYFTPDRVEAFDADRQGATKDGVYIWGEPSQKVENEFVLPNFIEEGYKMAEAGSGGAGPRTSAMSDSEPALNICADERMPPRGELSGQESNGDMESAWTRMYAEDAPAEPYDLIARESWISDGSEADVNEKRDNLQEEPPVAKARVHTCGQCGAKLSSLRELRSHRTLVHAPSTSRTYSKLVTQRTIKKEVKTDDAPIAETLIDSKESIATSILQECDAIPDAKPKIEGIVKQEAKRRPRKDHVCPTCKVDQGSDAAFHAHLKIHPLECLTCGKLFFRRANLALHVKTHLGIKNYKCEVCEKRFLTRQKMMEHLNVHTGRTPVKCTLCDDTFKRYSNMVQHRDRHHLQKKAKVRDYLCGCGLVFHSRARLRWHAETHAARPRACSYCSDKFVHAASLTRHVRRNHNQYYLSHRHKPADNVPCVVCKQVYLRSNLRAHMQTHSGKRPYHCVICNKSFTTKWNLKLHRWTHMSRSSKPYKCTLCKGAFIRQSEYVSHMNAHKSVRPYTCNYCGCQFIRKYNCQRHVREHEMGKKYVCKVPECGKSFHRSYYLSEHMKVHSGARPFSCNICGKTTSNKSNHNKHLKIHHAREPVATEA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -