Cnem008720.1
Basic Information
- Insect
- Choreutis nemorana
- Gene Symbol
- -
- Assembly
- GCA_949316135.1
- Location
- OX438605.1:2519260-2526039[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 0.013 0.99 10.4 0.5 2 23 142 164 141 164 0.92 2 15 2.7 2e+02 3.1 1.8 3 23 169 190 167 190 0.93 3 15 0.0051 0.38 11.7 0.1 1 21 426 446 426 447 0.96 4 15 0.04 3 8.9 0.8 2 23 457 478 456 478 0.93 5 15 0.0042 0.31 11.9 1.0 1 23 526 549 526 549 0.93 6 15 0.98 73 4.5 0.2 2 23 627 649 627 649 0.84 7 15 3.6e-05 0.0027 18.5 1.8 1 23 683 705 683 705 0.97 8 15 2e-05 0.0015 19.3 2.2 1 23 712 734 712 734 0.98 9 15 8.4e-05 0.0062 17.3 2.3 1 23 739 761 739 761 0.96 10 15 0.0051 0.38 11.7 1.6 1 23 767 789 767 789 0.97 11 15 3.7e-06 0.00027 21.6 2.8 1 23 795 817 795 817 0.99 12 15 7.4e-05 0.0055 17.5 2.6 2 23 824 845 824 845 0.98 13 15 0.00083 0.061 14.2 0.5 2 23 854 876 853 876 0.94 14 15 0.0001 0.0076 17.0 1.4 1 23 881 903 881 903 0.98 15 15 0.00069 0.051 14.4 1.9 1 23 909 932 909 932 0.98
Sequence Information
- Coding Sequence
- ATGGTTTCTGATGACTCTGAGGATGAACCGCTATCAATATTGGCCACCGTTAAGAATAGGCATCGAGAGAAAATATCTTATAAACAGCCATCAGAAGACGAGTTTGATGATAGTGAAGATTATGAGcccaaaaagaaaaagaagaagagGATAGTGATGAAAAGACTTGGTGTGTCTATCAGCATTAAGAAAAAGTCGGAGCCCATTATAATAGAAAGGCCAGCTGATGTGTGGTTGTATTTAAAAGACCTGAACCCCACTGGGCCTTACAGTTGCTTATTATGTCCTGAATGGTTCCTTAACAAAGCCAAAATGGTTTTGCACTATGTTTTAAACCATAGAAAAGATTATTGTGGAATTTGCAGATACTTTGTTCCTGACAGATTAGCCTGGCTTGAGCATTCTAAATTTCACACCCCTTGGTCATGCTCCCAATGCAGTGAACACTTTATTAGTGAGTCAGAAATGAAGCAGCATCTTAGTGCAGCTCACAACCTCGTTCACTGCAGAGTCTGCCATTACATGGTGCCTGATGATGACCAGTACAACACACACCTGTCTCAAAAGCACAATGTCACAacagttacaaataaaaatgcagAACATGTGTGGGAGTTAGAGTATGATGGTAGTACAAAATTCCTTTGCAATTTCTGCTCCAAATCAATTCTAGTACTAAACTACTTTAACCATTATATGGGCTACCACCACTTCACAATTAAGTGTTTGACAAATATCATATGTAGAACAGAACCTATGTTTTCCATCAAAGGTGCAAATATCAGTGctgattttgttgaaaatCATGTCAAAGATCAACCACATTTTGGCTATGTGGATATGAATCATCCGAAAATAGATCATGCTGCAGAAACAGCTGTTGATGTTGAAGTGAATCCTATATTGAATATGCTGATCCCTGAAATAAAGCAAGAACACCTGAGTGACAATGAACCAGAAAAGATTGAAGAGGAAGAAGTTTCCAGAGAAATAGAGCCTTTTAATGACCTATCAAAGACCTATAAAGGACAAGAAGACTTTGATTGCACTTTGACTGAGCTAATTGTCTTCCAAAAGTCATACTACAAGTACTTGAGCCACACCATCAAcacattaaaatgtaatgttgtACCTGTTATATCTGAAATAGATTATGAAGACACTAAAGAAATATTACTTGATGTCATGTGCAGTCTTTGCAAGACAAAGCACAATACGgctcaagcatttatttcccATATGTGGAAGACACACAGTGTAAAACATGTGTCATATTTCTCCTGTAGAGTATGTGCAACAACATTTGATAGTGAGTATGAGTTAAACAATCACATAAAAGAAGAGCTGGGGGATTTTGATGATCTATGGATTTGTCAATTTTGTGATAAAGAATTTGATAATCGGGAGCAGTCAAGAAAGCATTTGACAGAACATTGGGAGATTCTTGAGTATGACAACTGTTTTAGTCCGCACATGGGATTCAAATGCCGGTTCTGTTCGATTTTGTTTTGGAATGAAACTGATAGGGAAAAACACCAAGTCAGGACTCATTTAGATGGTTTTAAGGaccaattttataaatgcCAGGAGTGTTCAGAAATTTTCAGTGATAAGATCTGGTTCAACTATCACTACTTAGACAAGCATGGGGAGAAGTGTCGACCTCAGCAGCATATGATAAAGTGCTGCATATGCTGTCTAGTACTGGAGAGTGTTGAGGATATGCGCGCTCACTTCCTCTGCCATCATCCGGATGCTAAAAAGATATTCTGCACTTTACACCCCTGCCTCTACAGACCTCTTAGCCATAAGAAGTCATTTACCCATCATGTTAGAACTCTTCACAACCCGAACGCGAGTAAAGCGGAGCGCCCGGCTACGTGCGCGGTGTGCGGCCGCGAGTTTATGAACGCGCGCGCTTGTACGGCACACGTAGCACAGGTGCATGGGACAGGGAAATTCAAATGCAAGATATGTCTAGCAGCTGTACATACTATGGACGAAAGGAAACTCCACTACATGCTAAAGCACCCTGGTCGGCATCCTTTCGAGTGCTCTGAGTGCGGCAAATCGTTCCAGTACAAGTCTTCCCTGTACATGCACAAGCAGGAACACTCGCCCAATAAGACTTCCTTCGTCTGCAACTACTGCCATAAAGTCTTTGCGaaaaaagaTTCGTACCGAGAGCACGTGCAGATCCACCTGGGCCCCCGGCACGCGTGCTCGTACTGCCCCATGCGGTTCGTGCAGCGCTCCAACATGCTGCGGCACGAGCGGCGCCACACGGGCGAGCGCCCCTACACCTGCAGCCAGTGCCCGCGCACCTTCGCCGACAAGGGCGCCTGCAGCTCGCACGCCAAaACACATTCACAAACTACTCCATACACTTGCATGTACTGTGGAACGAAGTTCGTTCAGAAATCGAAGCTCAACTATCATATAAGGAAACACACTGGTGAAAATCTAGAAACATGCAAGGTTTGCTCGAAAATATTCACAAGCGCGTGCTCGCTCCGTGAACACATGAAGATCCATAATCGAAACAAGAGTGAGTACTCAAAGTGTCCCATTTGTGACCGCTCGTACCACGACGAGAAAGCGATGCAGCGTCATGTGAAAGCTGCACATTCAGACGAGACCCACCGCTGCCCGATATGTGATAAGAACCTTTCAAGTATCTCGGGGCTTCGTCACCACATCGTCACCCACGGCAAGGCGCACATGTTCCGATGCAAAATATGTCCAAAAACAAGTTCCGTGCGACGCACGATGACGATCCATCTTCGGAAGCGGCACTCTCTAGCCAGTCAGATAGCACTTAAAGACTTCTACTCAAGGCTCGACCCTCGTGACTGTGATCTAGGTCTGGATGAGGAAACCATAGAGAAAATCTATGGTCCCAGAAAACCAGAGCCAACCGGTTTTATCAACGATCTAGTAACGCTGTCGAAGCGTATCGCGGAGTCGGTAGTCAAAAACGCCAAAGATATGCAAGAACAGAATGGAGACAGTGAAGAAGATAGTCAAGAAGAGAGTGAAAAAGACAGTGATGGTGACACTGATGAACCGCCAAAAGTTAAAGAAGAATCCAAAGAAGGAAGCGAAGATGAGTTGGAGCCGACAGACTTTGTTAGCGTTAAAATAGAACCACTGGATGACCCGGAAGAAATCATATCTTAG
- Protein Sequence
- MVSDDSEDEPLSILATVKNRHREKISYKQPSEDEFDDSEDYEPKKKKKKRIVMKRLGVSISIKKKSEPIIIERPADVWLYLKDLNPTGPYSCLLCPEWFLNKAKMVLHYVLNHRKDYCGICRYFVPDRLAWLEHSKFHTPWSCSQCSEHFISESEMKQHLSAAHNLVHCRVCHYMVPDDDQYNTHLSQKHNVTTVTNKNAEHVWELEYDGSTKFLCNFCSKSILVLNYFNHYMGYHHFTIKCLTNIICRTEPMFSIKGANISADFVENHVKDQPHFGYVDMNHPKIDHAAETAVDVEVNPILNMLIPEIKQEHLSDNEPEKIEEEEVSREIEPFNDLSKTYKGQEDFDCTLTELIVFQKSYYKYLSHTINTLKCNVVPVISEIDYEDTKEILLDVMCSLCKTKHNTAQAFISHMWKTHSVKHVSYFSCRVCATTFDSEYELNNHIKEELGDFDDLWICQFCDKEFDNREQSRKHLTEHWEILEYDNCFSPHMGFKCRFCSILFWNETDREKHQVRTHLDGFKDQFYKCQECSEIFSDKIWFNYHYLDKHGEKCRPQQHMIKCCICCLVLESVEDMRAHFLCHHPDAKKIFCTLHPCLYRPLSHKKSFTHHVRTLHNPNASKAERPATCAVCGREFMNARACTAHVAQVHGTGKFKCKICLAAVHTMDERKLHYMLKHPGRHPFECSECGKSFQYKSSLYMHKQEHSPNKTSFVCNYCHKVFAKKDSYREHVQIHLGPRHACSYCPMRFVQRSNMLRHERRHTGERPYTCSQCPRTFADKGACSSHAKTHSQTTPYTCMYCGTKFVQKSKLNYHIRKHTGENLETCKVCSKIFTSACSLREHMKIHNRNKSEYSKCPICDRSYHDEKAMQRHVKAAHSDETHRCPICDKNLSSISGLRHHIVTHGKAHMFRCKICPKTSSVRRTMTIHLRKRHSLASQIALKDFYSRLDPRDCDLGLDEETIEKIYGPRKPEPTGFINDLVTLSKRIAESVVKNAKDMQEQNGDSEEDSQEESEKDSDGDTDEPPKVKEESKEGSEDELEPTDFVSVKIEPLDDPEEIIS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -