Cnem019789.1
Basic Information
- Insect
- Choreutis nemorana
- Gene Symbol
- -
- Assembly
- GCA_949316135.1
- Location
- OX438622.1:4470332-4477278[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 1.1 80 4.4 2.2 1 23 111 133 111 134 0.92 2 18 0.18 14 6.8 1.6 3 23 158 178 156 179 0.94 3 18 1.6 1.2e+02 3.9 10.8 1 23 201 223 201 223 0.96 4 18 0.00051 0.038 14.8 0.6 1 23 227 249 227 249 0.98 5 18 0.015 1.1 10.2 1.4 1 23 254 277 254 277 0.97 6 18 0.00051 0.038 14.8 1.2 1 23 283 306 283 306 0.95 7 18 0.31 23 6.1 5.1 1 23 313 335 313 336 0.75 8 18 0.076 5.7 8.0 1.4 1 23 342 364 342 364 0.93 9 18 0.0031 0.23 12.4 0.6 1 23 487 510 487 510 0.96 10 18 0.081 6 7.9 0.1 1 23 657 680 657 680 0.95 11 18 0.98 73 4.5 0.1 2 23 705 727 704 727 0.93 12 18 0.062 4.6 8.3 0.1 1 23 751 773 751 773 0.96 13 18 0.00036 0.027 15.3 0.2 1 23 777 799 777 799 0.98 14 18 0.002 0.15 13.0 1.0 1 23 804 827 804 827 0.94 15 18 0.04 3 8.9 0.3 2 23 834 856 834 856 0.92 16 18 0.054 4 8.5 6.6 1 23 863 886 863 886 0.97 17 18 6.4e-06 0.00047 20.8 2.3 2 23 893 914 892 914 0.96 18 18 0.00012 0.0088 16.8 0.4 1 23 920 942 920 942 0.98
Sequence Information
- Coding Sequence
- ATGGTCCAAAGGACAGATACCGATGCCCAGTCTGTGACTCTTATTTCGACTCGTATCATTCCAGACTACGCCATCTCGATAAAGTACACGGCCAGAAAGTCGAATACAAGTGCACAATGTGTCCGTCAGTTTTCGGAACTGGAACgAGGAAAATCTGGAGAAGTGGATAAAATCAATGAAGTGGAAACAAACACAGAATTAGATAATAAagcagaaataaaattgaagatACAAGATTTAGCAGAGACGAGAAGGAGAATATTCAGGAATAACATATTAACTATTGTTGAGTCAAGCACGGCTTATCCGTTCAGGTACAGGAGAGGAATATACCTGTGCTACTTTTGTAAGAATACGTTTATGGAACCAGAAAAACTTCGAGAACACAACCAAGTGCACCACAGACCTATTAAAGAACTActtaaatatagaaaatatgAACCTCTTAAAATGGACTTCTCCACAACCAATTGCAAGTTATGCGGTAGCGATACACCTAACTATACTACGCTCAAAACTCATTTATCCGTTCATCACGGTAAAGAAATAGACTCTACGTACGGCGAAAGTATATTACCTTATTCACTAAGCAGAGATGAGCATTGCTGTCAGATATGTAGTAAACGATATGAAACATTCCTCAGCCTGCACAAGCACATGAATCATCATTACGAACATTTCATTTGCGAAACTTGCGGTAAAGGGTTCGCGACTTCCCAAAGAATGTTGAATCACTCGCGAACGCATCTCCGAGGAAACTTTTCTTGTAAGAAATGTAACGAAACTATGCCAACTCACGCCGCATTATACAACCACATGTCAAAAGTCCATCGCTCGAATAATAGATACAAGTGTCCCCTTTGCGATGAGAAATTTACATCTTATAAGCAAAGGTTGAAACATTTGAACGATGTTCACGGGGAGAAGACTGCCAAGTTTCCTTGCCCGTCCTGCCCGCGTATCTTTGATCTGTGCAGCCTCCGAACGCACCATATTAAGTTTCACCATTTACAGGAAAGAAATCATGTTTGTGCAGTTTGTGGTATGAAATTTTTCGCAAATCACGAACTCCAAGAGCATTCTGTTAAACATGGTGGTGAAAAGAAATATCAGTGTGATGTTTATGGCGATCGATTTGAACTTCGGTCTAAGGGTTTCCTCAAAGAAGAAAAAGTCGTGGATCTTACGGAAACGTCACAAATACACGAAACGGAATATACTTTCACTGAACTAATTAATGTACCGAGAAATGATTCAAAGGGTGAGATTCGGCTAATGACTGAAAGTTATGAAGATCAAGAATATGAGACACCTGATAACGCTATGTCCTATTTTAACATGCAAGAACTCAATCTATTTAGTTCTGAACAAGAAGAAAATCTACAGAAAGAAGCTGACCCGaataagaaaataagaaaacgtCGACAAACCCGATATTTTGGATTTGTAAATAACATGTATATATGCTACAGCTGCGATGCCTCATATAAAGATTTGAAAGATTTAAGAGACCATTACAATAAAGAACATAATGATTTCAATTACAATGTTACAATGATGTATTCGCCTCTAGATAGATCAAGACGCCACTCGCCAATCGCAACCGATAAAACGACGTCCACAAAACGGATGGTGCCGTTATTTCAAGTTGCATACGACCGCAGCTTATGTAAACCTCTTGGAACAATAGCAAACTTTGATAAACTAGCTGTGAAAGGAGCTAAATTTGGTATCCATCTCCCAAAAATTGCATCAACGTCCAAAATTAGCGCTCCGCAGACCAGCCCCCCTCATTCCTCAGAGACTATTGCGATGACTCCTTCGCAAGATACAGACGAGCTTGACGACTTGCCTACGACTGTTATAAAACCTAAACTTGTTGCCAAAAAGAGTCCAGACGTCCGGCAAAATGCCATCACTCTATTTGAGAACTCAACTGTATATCCCTTCATTTACGGgaataataagtttaaatgtttCGTATGCGCTCTACCATTTTTTCAAGTCTCTGTGCTAAGAGTTCATATGATCGAATCACATGCGTTCGGGCTGTCAAAACGACTTGTAAACAATAGGCGAGAGAACGTCCTTAAGGTAGATGTAGGAGACATGATGTGCAAAATATGTTCGTTAAGACCTGCTAACCTGAAAGACTTAAAGGttcatttaaaagaaattcacaataaaaatataaatcctGACTTAAACGATAACATAATACCATTTAATTTAGACGGAAATGGAGAAAACTTTAAATGCGTGATCTGCAACGAAAGGTTTATCAAAGTACGCATCTTAGTAATACACATGAGTGTTCATTTTAACAACTACAGTTGTGAAATTTGTGGTTCTGGCTTCATGACCCTGCGTCTTCTTAAGAAGCATTTGGAAGTACATGAGACCGGAAACTTCTCGTGCGATCGTTGCGATAAAGTATTTAACACATCATACAAGCGATCCCTTCACGTCAGAGGTGTGCACTTGAAACTATATCCTCGTCGATGCCCGCTATGCCCCGAACGATTCAATTCTAACTATAGACGAACCATCCATCTCCAAGACGTCCACAATCAATCAACTCGGGTTCACAAGTGTGAGACTTGCGGCCGGGGATTCAATTTAAAGTACCACTTAATATGCCATCGGCGGTCTGTACATTTGCAAGAGAGGAATCAGCAGTGCGATGTTTGCCATCAAAGATTCAGCAACAAGGAGTCTTTGAAACGACATATGGTGATACACACAGGAGAAAAGAATTACAAGTGTGAAGTTTGCGGAATGGCGTTTTTAAGGAGAAAAAATCTTAAGGACCATGCACGGTTGCACGACGTAGTTTAA
- Protein Sequence
- MVQRTDTDAQSVTLISTRIIPDYAISIKYTARKSNTSAQCVRQFSELERGKSGEVDKINEVETNTELDNKAEIKLKIQDLAETRRRIFRNNILTIVESSTAYPFRYRRGIYLCYFCKNTFMEPEKLREHNQVHHRPIKELLKYRKYEPLKMDFSTTNCKLCGSDTPNYTTLKTHLSVHHGKEIDSTYGESILPYSLSRDEHCCQICSKRYETFLSLHKHMNHHYEHFICETCGKGFATSQRMLNHSRTHLRGNFSCKKCNETMPTHAALYNHMSKVHRSNNRYKCPLCDEKFTSYKQRLKHLNDVHGEKTAKFPCPSCPRIFDLCSLRTHHIKFHHLQERNHVCAVCGMKFFANHELQEHSVKHGGEKKYQCDVYGDRFELRSKGFLKEEKVVDLTETSQIHETEYTFTELINVPRNDSKGEIRLMTESYEDQEYETPDNAMSYFNMQELNLFSSEQEENLQKEADPNKKIRKRRQTRYFGFVNNMYICYSCDASYKDLKDLRDHYNKEHNDFNYNVTMMYSPLDRSRRHSPIATDKTTSTKRMVPLFQVAYDRSLCKPLGTIANFDKLAVKGAKFGIHLPKIASTSKISAPQTSPPHSSETIAMTPSQDTDELDDLPTTVIKPKLVAKKSPDVRQNAITLFENSTVYPFIYGNNKFKCFVCALPFFQVSVLRVHMIESHAFGLSKRLVNNRRENVLKVDVGDMMCKICSLRPANLKDLKVHLKEIHNKNINPDLNDNIIPFNLDGNGENFKCVICNERFIKVRILVIHMSVHFNNYSCEICGSGFMTLRLLKKHLEVHETGNFSCDRCDKVFNTSYKRSLHVRGVHLKLYPRRCPLCPERFNSNYRRTIHLQDVHNQSTRVHKCETCGRGFNLKYHLICHRRSVHLQERNQQCDVCHQRFSNKESLKRHMVIHTGEKNYKCEVCGMAFLRRKNLKDHARLHDVV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -