Cnem020666.1
Basic Information
- Insect
- Choreutis nemorana
- Gene Symbol
- -
- Assembly
- GCA_949316135.1
- Location
- OX438624.1:3708662-3718700[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.00023 0.017 15.9 0.7 1 23 191 214 191 214 0.97 2 11 0.028 2.1 9.4 1.2 2 23 221 242 221 242 0.98 3 11 0.0001 0.0076 17.0 2.1 1 23 246 269 246 269 0.96 4 11 2.4e-05 0.0018 19.0 1.0 1 23 302 324 302 324 0.98 5 11 1.9e-05 0.0014 19.4 0.5 3 21 336 354 335 359 0.91 6 11 0.0035 0.26 12.2 1.6 1 23 396 418 396 418 0.96 7 11 0.0043 0.32 11.9 0.7 2 22 427 447 426 451 0.90 8 11 0.00061 0.045 14.6 1.0 1 23 459 482 459 482 0.95 9 11 0.0002 0.015 16.1 3.4 1 23 488 511 488 511 0.96 10 11 9.2e-05 0.0068 17.2 1.5 3 23 520 541 518 541 0.89 11 11 0.021 1.5 9.8 5.7 1 23 547 570 547 570 0.98
Sequence Information
- Coding Sequence
- aTGGAAAACACAGGAACCCTTAATTTATGCTGTGGCTGCCTCTGTGCGGGTAGGAAAATGTCGCTGCTCAAAGAGTTTTGTGACGAAAAGACTTTCTTGCTCAATTTTTCTGATAATACGGAATCGATAATAATGGGCTCtcaaattatgttttgttgGGAATGCAAGAACACGATTCGAAAAGTTATTTCCTTCAAAAAGCAAGTCAAGGAATCCTTTTTGAAGCTACAACAATGTATTGAAAAGTCAACAGATCCATATTCAATATGTAAACAGCCATCACTTCAAACACAGCTAGTCTCCGAACTGTCTTTCGATGCAGAATTCATCAACAATACAGTACCGGTCAAAACGGAGCCTGAATCAGAAACTGAACAAAAGCTAAACCCAGAAAGTTCAGACCATTTTGATGCTGACGATGAAGTGCCGTtacgtaaaagaaaaaagaagaaaaagaatCCAAAAGTAACTTTAGGGGATTTAGTATATAAGAAACTGGAGTTAACATTGGATGAGATTACGAAGGAGAGAGAGTTACTACTGCTTAGTGATGACTATGTGAATGCAATGTTTCGTTGTAATAAATGCATCAAAGCATTTCCAAATAAAGATGACTACAAGGATCATATTGCTACAAAGCATGAAATTataTCAAAAAGGAAGTGCTCAATATGTGATTGTGCATACACAGCTGAAATGTCTTACGCATACCACATGAAAAGGCACAAAGTGAGATACGAGTGTACGATATGCAACAAAAGATTTACAAGCATAAGATCCGttacaaaacattacaaacTAACTCATTCTCAAATCCCACTAGACTACAGTTTggataaaacaaacaatgctATAATTGAAAAAGGAGACACACCTGATGTAGGAAATGTAAGtgTAAATGAATTCATATGCGAGATGTGCAACAAGTCGTTTCGTTGGAAGGCCTCGCTGAGAAAGCATCTCGAGACGCACAGCATTGAGAACGGACAGAAAAGGCGGCCTTACTGTGAACCTTGCGGGTTGTCTTTCTCGACGAGTTCTAATCTTCAGAAACATATGAAGTTGAGCGCAAAACATCAGTTGCAGCTTAGATTGAGaaaactttCCGACTCAAACTTGGACGCCACAGAACATAAAGCGAAGAGACGTCaacttgaaaataaactaCGTGAAGGGCGCGAACTGTTCGCTTGCTCGCAATGCGACAAGAAGTTCCAATGGCGAGGGAACCTGGCTAGGCATGTACACAGCCACCTACACAGAACGAAACGCGATTTAGTATGCGAGCCGTGCAACAGGACGTTTTCATCGTTAGCAACGTACAAGCAACATATGAAGATAAGCAAAAAACACGTGTCCGAGGTTGACTTCCAGCACATGTGCAGCGACTGCGGCAGTAAATTCGCCAGCAAGACTCGACTTAGAGATCACATCAATTGGGAGCATCTCAAAAACTACGTGCACACGTGCGAGGTCTGTCAAAAgGTATTCAAAAGCCACACGTCACTATACATCCACAGGCAAGTCGTACACAAAATGAATGGAACCGAACACCTCTGCGATCACTGCGGGAAAGCTTTTGCGaaCCGCACGAAGCTCCGAGCTCACAGCATGGCGGTGCACTCGGGTCAGTCTCCTTACAAATGCGGCGTTTGTTCAGCGCACTTCAGCTGGCACTCATGTCTCTCCAGGCATATGAGAAAGGCACATTGA
- Protein Sequence
- MENTGTLNLCCGCLCAGRKMSLLKEFCDEKTFLLNFSDNTESIIMGSQIMFCWECKNTIRKVISFKKQVKESFLKLQQCIEKSTDPYSICKQPSLQTQLVSELSFDAEFINNTVPVKTEPESETEQKLNPESSDHFDADDEVPLRKRKKKKKNPKVTLGDLVYKKLELTLDEITKERELLLLSDDYVNAMFRCNKCIKAFPNKDDYKDHIATKHEIISKRKCSICDCAYTAEMSYAYHMKRHKVRYECTICNKRFTSIRSVTKHYKLTHSQIPLDYSLDKTNNAIIEKGDTPDVGNVSVNEFICEMCNKSFRWKASLRKHLETHSIENGQKRRPYCEPCGLSFSTSSNLQKHMKLSAKHQLQLRLRKLSDSNLDATEHKAKRRQLENKLREGRELFACSQCDKKFQWRGNLARHVHSHLHRTKRDLVCEPCNRTFSSLATYKQHMKISKKHVSEVDFQHMCSDCGSKFASKTRLRDHINWEHLKNYVHTCEVCQKVFKSHTSLYIHRQVVHKMNGTEHLCDHCGKAFANRTKLRAHSMAVHSGQSPYKCGVCSAHFSWHSCLSRHMRKAH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -