Cnem013934.1
Basic Information
- Insect
- Choreutis nemorana
- Gene Symbol
- ZNF296
- Assembly
- GCA_949316135.1
- Location
- OX438612.1:9471916-9477295[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.13 9.6 7.3 0.0 2 23 148 169 147 169 0.97 2 11 1.4e-05 0.0011 19.7 0.7 1 23 175 198 175 198 0.96 3 11 0.00072 0.054 14.4 0.3 1 23 205 227 205 227 0.98 4 11 5.9e-06 0.00044 20.9 1.4 1 23 233 255 233 255 0.98 5 11 3.2e-05 0.0024 18.6 0.3 1 23 261 283 261 283 0.97 6 11 0.00079 0.058 14.2 2.9 1 23 289 312 289 312 0.98 7 11 1.6e-05 0.0012 19.6 0.6 2 23 319 341 319 341 0.96 8 11 0.0043 0.32 11.9 0.8 2 23 347 365 347 365 0.96 9 11 0.00049 0.037 14.9 1.0 1 23 371 394 371 394 0.91 10 11 4.3 3.2e+02 2.5 0.4 1 23 400 425 400 425 0.92 11 11 4.3e-06 0.00032 21.4 2.2 1 23 431 454 431 454 0.97
Sequence Information
- Coding Sequence
- ATGGAGAAGATATGTCGTACTTGTTTGGAAAACAAGGCTACCATTTCAATATTCGAAAAAGCTGAAACCATTCAGTACAGTgcgaaaataatgaaatgtgTTAGCGTCGAGATCACTGAGGACGATGACTTACCTAAGTACGTGTGTAAGGACTGCGTGGATGAATTGAATGTGGCGTATGAATTCATACAGAAATGCGAAGCTTCAGACAACGCGTTGAGATGTCTGGCCATCCCGGACATCACCGAGGCACAGATGGAGCTGAAAGCAGAGTTTGATATCAAGCAGGAGGACATTAAACTGGAATTTGATGATGTCGACGACTTCAACAACGAGTTCCTTTTAGACAACTCCAACAACTATGAACCTTGCGATAAGGAACCTAAACCTAATAAAAGAAAGTATACAAAGAGGAAGAAAAAAGAGAAATTAGGTCCGATCCAGTGCGTAGTGTGCGGGCTGATGGTGGCGAGCCCCTCCGCACACGACATCCATATGAGGACACATACAGGTGAGAGACCATTCTCTTGTGAACTCTGCAATATGACTTTCCCTACAAAGGGGGCTCTCAAAAGACACACTCAAGTCAAACATTCAAAACGAGAACGCAAATTCACTTGTGAAACTTGTGGAAGCAACTTTTACAGCAAAAATGAGATTATAATTCACATCCGAGTCCACACACAGGAGAAGCCTTTTACCTGTCCATACTGCAGCCAGCAGTTCAGGCAGGTGTCCTCCCTGATCAGGCACAAGCGAATACATACAGGTGAGAAACCATTTGCCTGTCCCATATGTGATAAGAAGTTCCGTGTTAGTAATCTAGTCAAAAAGCACCTGAGTGTTCACAGCGAGGAGAGGAAGTTCTCCTGCCACCTCTGCAACAAGGCAATGAAGAGCAAGACCTCACTGTCTACGCACATCAAAACTATACATTCCAATGAGAAGCACAATGTATGCAGCTACTGCGGCATGACCTTCACCATGAAAGGGAACCTTGTCATGCATATAAAGAGGAAACACTCCCAAAAGTCAGGAGAGTGTGTTATATGTAAGAAAACATTCTCTGACCTAGAGGTGCACATGCGTCGGCATACCGGAGAGAAGCCCTACATCTGTGATGAGTGCTCCCAAGGCTTTGCCACTAAAAGGAGTCTAGCCCACCACATGGTGTTCAAGCACAAAAATGCTGATAAATTCAAGTGTTCTATTGGGTCTTGCATGAAGACATTCCCAACTGCCATGATGCTGGAGTTCCACCTGCTGAAGCAGCACACCAACCACACTCCATACATTTGCCAGCACTGCTCGCGAGGGTTCTTCCGCAGCAGTGACCTCACCAGACACCTCAGGGTCATACACATGGACCTCCAAATGAAGGCACCAAGGTGTTCTCGCTCGCACGTGAATGAGCGGCGGCGACGGATCAGTTCACTCAGTGCTCGCTACGTTCACATCAGGACGTTAGCCCGTGTCAGCCCGCGCCCGCCAGCCAGCGCGCACGTATTGTGTCTACGCCGTGTAGTGATCGTGCCAGGTtcaCTGTTAAAGGAGGATCCTCTCTCCAGGATCCAGAGAGAAATAATTGAAGTGACAGAGCGAGAGCGGGAGTTTAAGGAAGGCCACTTCAGATATAACCGTCTGATGTCAGAGTCCACGATAGAGATCCACAAACAGAACGGCCACACCAACGGCCACTGCGACGTGCTCGATCCACCGCGCGTTCTCAACCGCGCCGTGTCCACGTCGCACTTGCTCGGCCCCGTCTCCCCGACGCCACCGACCACTCCAGCAGCCTTCACCACCAACGGCTACGCGCGCCGTTTCACGCCGCAAAATGGCACTAAAGGCATCATGCAGAGGTTCATCGCCAACAAGGGCAAGCTCCCCCCGGCGCCGCTGGCCACCACCCCGCCGGCcgcgctgccgccgccgctCAGCGTCACGCCCTTCACACCCTCACCGGTGGCCGCACTCACCCCGAACATAGCCGTTGCCGCACCACCTGTCGTCTCACGCACACCTGAAGGGAAAGTTGTGAGGAAAGGATTCGTCCCTgtagaagaaaaaatacagaaaGAACTGCAGGAAATGAAGAACAGGGAACAGGAACTCAAACGGATGAGAAAGAAACAGAAGCCGTTCGATATAGATTTAAGCGATTGTGAGCTCTCTTCTGATTCAGAAGACGAAGACTTTCCCCTTCCCGGCAAACTGAAGCCGACTAAGTCTATCGGGGAACTGTATGAGGCGTTGAATGAGGAACTTCGGTCACCTTCTCCGAGAAATAGTTCAGGTCAGGAGTCTCTAGGCAGTTTGAAACCAGCCAAGTCTCTGGCAGAGCTGTGCGAGCTGGCTCCGGGCCAGGAGTTCCTCGCGCCGAGCTCTACGCGGCTCATTGCGCAGTGGGAGTCCATCATACAACAGAAACACGAAGCCGGAGCTGCCTAA
- Protein Sequence
- MEKICRTCLENKATISIFEKAETIQYSAKIMKCVSVEITEDDDLPKYVCKDCVDELNVAYEFIQKCEASDNALRCLAIPDITEAQMELKAEFDIKQEDIKLEFDDVDDFNNEFLLDNSNNYEPCDKEPKPNKRKYTKRKKKEKLGPIQCVVCGLMVASPSAHDIHMRTHTGERPFSCELCNMTFPTKGALKRHTQVKHSKRERKFTCETCGSNFYSKNEIIIHIRVHTQEKPFTCPYCSQQFRQVSSLIRHKRIHTGEKPFACPICDKKFRVSNLVKKHLSVHSEERKFSCHLCNKAMKSKTSLSTHIKTIHSNEKHNVCSYCGMTFTMKGNLVMHIKRKHSQKSGECVICKKTFSDLEVHMRRHTGEKPYICDECSQGFATKRSLAHHMVFKHKNADKFKCSIGSCMKTFPTAMMLEFHLLKQHTNHTPYICQHCSRGFFRSSDLTRHLRVIHMDLQMKAPRCSRSHVNERRRRISSLSARYVHIRTLARVSPRPPASAHVLCLRRVVIVPGSLLKEDPLSRIQREIIEVTEREREFKEGHFRYNRLMSESTIEIHKQNGHTNGHCDVLDPPRVLNRAVSTSHLLGPVSPTPPTTPAAFTTNGYARRFTPQNGTKGIMQRFIANKGKLPPAPLATTPPAALPPPLSVTPFTPSPVAALTPNIAVAAPPVVSRTPEGKVVRKGFVPVEEKIQKELQEMKNREQELKRMRKKQKPFDIDLSDCELSSDSEDEDFPLPGKLKPTKSIGELYEALNEELRSPSPRNSSGQESLGSLKPAKSLAELCELAPGQEFLAPSSTRLIAQWESIIQQKHEAGAA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -