Basic Information

Insect: Choreutis nemorana
Gene Symbol: -
Assembly: GCA_949316135.1
Location: OX438595.1:4756062-4771296[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 0.00046 0.034 15.0 3.0 1 23 306 328 306 328 0.99

2 11 1.3e-05 0.00099 19.8 1.0 1 23 334 356 334 356 0.99

3 11 4e-05 0.003 18.3 2.1 1 23 362 385 362 385 0.95

4 11 0.037 2.7 9.0 3.3 1 21 391 411 391 413 0.95

5 11 0.00048 0.036 14.9 1.0 1 23 419 441 419 441 0.99

6 11 1.3e-05 0.00094 19.9 6.3 1 23 447 469 447 469 0.99

7 11 0.0018 0.14 13.1 1.2 1 23 477 500 477 500 0.97

8 11 0.0024 0.18 12.7 2.0 2 23 507 528 506 528 0.96

9 11 0.00017 0.013 16.3 2.4 1 23 534 556 534 556 0.98

10 11 0.00035 0.026 15.4 7.4 1 23 562 585 562 585 0.95

11 11 1e-06 7.6e-05 23.3 3.3 1 23 599 621 599 621 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	0.00046	0.034	15.0	3.0	1	23	306	328	306	328	0.99
2	11	1.3e-05	0.00099	19.8	1.0	1	23	334	356	334	356	0.99
3	11	4e-05	0.003	18.3	2.1	1	23	362	385	362	385	0.95
4	11	0.037	2.7	9.0	3.3	1	21	391	411	391	413	0.95
5	11	0.00048	0.036	14.9	1.0	1	23	419	441	419	441	0.99
6	11	1.3e-05	0.00094	19.9	6.3	1	23	447	469	447	469	0.99
7	11	0.0018	0.14	13.1	1.2	1	23	477	500	477	500	0.97
8	11	0.0024	0.18	12.7	2.0	2	23	507	528	506	528	0.96
9	11	0.00017	0.013	16.3	2.4	1	23	534	556	534	556	0.98
10	11	0.00035	0.026	15.4	7.4	1	23	562	585	562	585	0.95
11	11	1e-06	7.6e-05	23.3	3.3	1	23	599	621	599	621	0.97

Sequence Information

Coding Sequence: ATGGAGAAACGTTCACACTCGAGGCACTCGCGTATTTGGCACGGGTTCAACAAACATCCATCGCGGAACGCATGTCCGGGACGACTGTGGAGTGTGGCGGCGgaggcggcggcgcgggcgctgGCTGGTGAGCAGCCCGCCCGCGCCGCTGCCACCCGCTGCACCTGCTTGCCACTCTACCCTGCCGGCCACTACTTTAACCATGAATCTCATCCCGATCCCACCAAAATAAGTACCCCCAACAAATACACCAGACGCGAGATGGCGGCCGCCTGCttcttttatttacacatCGGCAAgttCTCATGGTCGTCGTGCGCCGCCATTTTGGCGTCAGTATCGCGCGCATCGAACGCCCTCGTCGTTAGGTTTCAGAAGTTTTCTCACAGAATTTCAAGAATTTCAGCTATGCCACCTGATAAGAAGGGGCTAAAAGGAGGTAAGACCATATTAAGGTCTTACATTAACTCATTTGAACAAGAAACTACTGAAGGGACTGTTCTTACAGTAGAAGGGAATGGAGAAGATGACCAGGAAGGTGTTACATATTTTGTTGACGAGGAAGGCCGGTACTACTATCAGAGAGCTGGGGACAATCAGAACATTGTCTCCTTACCTACTACGGTTGAAGAAACTGAGCAAGCTATTCAAGAAGATGAACAACCCATGGAGCTATTGGAGACAGAGGACTTCCAAACTGTAACCCTGGTACCATCTGAGTCAGCTGGTGGGGAAGTGAGCTATGTCCTTGTAGTGCAAGAAGACAACAAGCCTGTTGtcaatattaacattaagAATGAAAGCAAGGACGATGATGTGTACAATTTTGAAGATGAAGAGGCTGGGGAGGAAGAAGAAGAGGAAACTGAAGATGCACCCAAGACAAAGAGTAAGGGGAAATACAAACGCCCACACTATACATGCAGCTTCTGCTCCTATACCAGTGACAGgagatatttacttttGCGGCACATGAAATCTCATTCAGAAGATCGCCCATATAAGTGCAAGGTTTGCGAACGCGGCTTCAAAACTATGGTCTCGCTACAGAATCATTTGAATATGCACAATGGTGTCAAACCCCACATCTGCAAGTATTGCAAGACTCCATTCACTACTTCTGGCGAGCTGGTTCGCCACGTCCGTTACAAGCACACGCACGAGAAACCGCACAAGTGCACGGAATGCGACTACGCTTCTGTTGAACTGTCAAAGCTAAGGCGCCACGTGCGGTGCCACACGGGGGAGCGCCCATATCAGTGCCCGAGCTGTACGTACGCGTCACCGGATACTTTCAAGCTGAAGCGGCATCTTCGTACGCACACAGGCGAAAAGCCGTACAAATGCGAACACTGCAACATGTGCTTCACTCAGTCAAACTCGCTCAAGGCTCACAAGCGCATACACAACGTGGCTGACAAGCCTGTGTACAAGTGTGAGCTGTGCCCGGCGAAGTGTGGTCGCAAGACAGACCTGCGTATACACGTGCAGAAACTGCATACGAGTGACAAACCACTCAAGTGCAAGCGCTGCGGGAAGACCTTCCCAGATAGATACACCAGCAAGATGCACGCCAAGacTCACGAGGGGGAGAAGTGTTTCAAGTGCGACCTGTGTCCGTACGCGTCGACCACCCTGCGGCATCTTAAGTCGCATATGCTCAAACATACAGATGAGAAACCATTCTGCTGCGATCAGTGCGACCAATGCTTCAGGCAAAAGCAGCTGCTCCGTCGTCATCAGAATTTGTACCACAATCCGAACTACGTGCCGAAGCCGCCAAAGGAAAAGACGCACTCGTGCCACGAATGTGGAAGGACTTTCGCTCACAAGGGCAACCTGATACGCCATCTCGCTGTACACGACCCAACCTCAGGGCACCAGGAAAGGGCTCTAGCTCTCAAATTGGGCAGGCAAAGGAAGATCAAATACATCGACACTCCCAAGATAGTGGAGGAGAACGCTGAGTCTGGTAATGAAGAGGACCTGGTGAAGCTGGGTCTATCTGGGGATATGAAGCACGGGGAGTTGGTGACTGTGGCCTCCGGAGATGGCCAGCAGTACCTCGTGCTGGAGGTTATACAGCTGGAAGATGGAACTGAGCAGCAGGTCGCTGTCGTCGCGAGGGATAACTATATGAACGAAAACAACGAGGAAGTTCAAGAGGAAGGTGAGGAGGGTGAGGATGAGGACGAGGATGTTGAGGAGGACGTAGACGAGGATGAGGACGTAGACGAGGATGAGGAGGACGAGGACGAGGAGATGGTCGCCGAGGATGTGGACGACGACGACGACGAAGAAGTAATTGAAATGAAGCAGATGCAGCAACAACAGCTCACTAGGCAGAAGGACCTCGAAAAAAGCATCAAACTAGAGAAGGAAGTCGACACGTGCTTCGGTTTTGATGAGGAAgacgaagaagaagaagaagaggAGGAAATTGAAGCGGTAGAGTTTGAGAGTGGTAAAGTGGTTTTACGTATAGTTTAA
Protein Sequence: MEKRSHSRHSRIWHGFNKHPSRNACPGRLWSVAAEAAARALAGEQPARAAATRCTCLPLYPAGHYFNHESHPDPTKISTPNKYTRREMAAACFFYLHIGKFSWSSCAAILASVSRASNALVVRFQKFSHRISRISAMPPDKKGLKGGKTILRSYINSFEQETTEGTVLTVEGNGEDDQEGVTYFVDEEGRYYYQRAGDNQNIVSLPTTVEETEQAIQEDEQPMELLETEDFQTVTLVPSESAGGEVSYVLVVQEDNKPVVNINIKNESKDDDVYNFEDEEAGEEEEEETEDAPKTKSKGKYKRPHYTCSFCSYTSDRRYLLLRHMKSHSEDRPYKCKVCERGFKTMVSLQNHLNMHNGVKPHICKYCKTPFTTSGELVRHVRYKHTHEKPHKCTECDYASVELSKLRRHVRCHTGERPYQCPSCTYASPDTFKLKRHLRTHTGEKPYKCEHCNMCFTQSNSLKAHKRIHNVADKPVYKCELCPAKCGRKTDLRIHVQKLHTSDKPLKCKRCGKTFPDRYTSKMHAKTHEGEKCFKCDLCPYASTTLRHLKSHMLKHTDEKPFCCDQCDQCFRQKQLLRRHQNLYHNPNYVPKPPKEKTHSCHECGRTFAHKGNLIRHLAVHDPTSGHQERALALKLGRQRKIKYIDTPKIVEENAESGNEEDLVKLGLSGDMKHGELVTVASGDGQQYLVLEVIQLEDGTEQQVAVVARDNYMNENNEEVQEEGEEGEDEDEDVEEDVDEDEDVDEDEEDEDEEMVAEDVDDDDDEEVIEMKQMQQQQLTRQKDLEKSIKLEKEVDTCFGFDEEDEEEEEEEEIEAVEFESGKVVLRIV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -