Cnem002819.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Choreutis nemorana
Gene Symbol
prg
Assembly
GCA_949316135.1
Location
OX438597.1:8089295-8091118[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 10 0.07 5.2 8.1 2.4 1 23 178 201 178 201 0.90
2 10 5.1 3.8e+02 2.3 0.8 1 23 207 230 207 230 0.93
3 10 1.3e-06 0.0001 23.0 1.8 1 23 236 258 236 258 0.96
4 10 2.5e-07 1.9e-05 25.2 2.8 1 23 264 286 264 286 0.99
5 10 1.7e-05 0.0013 19.5 0.1 1 23 292 314 292 314 0.97
6 10 0.0008 0.06 14.2 0.5 1 23 320 342 320 342 0.95
7 10 6.6e-05 0.0049 17.6 1.0 2 23 433 455 432 455 0.95
8 10 0.00013 0.0096 16.7 1.3 1 20 461 480 461 482 0.95
9 10 1.5e-05 0.0011 19.7 1.6 1 23 489 511 489 511 0.97
10 10 0.0014 0.1 13.5 0.0 3 23 520 540 518 540 0.92

Sequence Information

Coding Sequence
ATGGAAGATTCTTTTATAATAGCAAACTTGCACTCCCTGTGTCGATTATGCCTGAATAGAAGTGCAATAATGATATCTATCTTTGGGCCTGTACCTGATGATGAGACGAATTGTACTTTAACCTCAAAAATAGCTGAATGTTTTGAACTTCAGATGGACCCTAGTGATGGATTGCCTGGTAGAATATGTTACAGATGCTTGTTTAAAGTGGATAAATGTTCTAAGTTTAAGTTACAATGCATTCAAAATGAGACTAGACTGAGACAGATTGCAAATAGACATAGAGAGCTGGATAGCATCAATCCTTCTGACATGATTGGATTTAATTTCCCTAAACCACAGGATATACTTAAACCTAAGGCTGAAAACTATATTGTAGAAGACAGTGTTGTTATGGTGGTGGACCCTAGCCTTGACTATGACTCCTCTGAAGAGTCTGATAATGTAGTAGACCATGCAGATGAAGAAGTGCACGACCATGACAATGTCCCTGAAGGAGAGCCCATGGCTGACTCATTCTTTAAGAATGTATTCATGTGTCAATACTGTGACCAAGCTTTTGTTTCACAAGAAAAATGCAATGACCACGAACTGAAATACCATGACCCCAACCTACCTTACAAATGTATTGAATGCAGTCTTGTGTTTGGTGAAAGAACTCAGCACATTCAACACATCAGACAAGTTCATGGTAATGACAAGCCCTACCACTGTCCTGAGTGTAACAAAAGCTTTGGAAGAAGATCTGATTTGAGAAAACATTCAATAGTCCACACTGGTATAAGACCCTACCAGTGTCAGTACTGTTTGAAAAGCTTTTCACGTAACACAAACTTAAGCAAACATCTCAGAATTCATGCTGGACACAAGCCCCATGTCTGTCCTCTGTGTCCTCGGAGCTTTGTTGCTAAAGGAGATCTCCAGAGACATGTGTTAATACACTCAGGGATGAAGCCATATGCTTGTAGAAAATGTCCTTTGACATTTGGGAGACGAGACAAACTGATCAAGCATGAAGTGAGGCATGGCCCTATCAGTCCAGACCATAAAAACATAGAACTAGAGACTGAACAAAATATGATTGTCAATGTTAACCCCTTCAATAACCTTCTTACATCACCCTCCCAAATTAACTTGGATGCTTTAAATTCTTTTGAACTGCCAAGGGTACCAGACCATATAATGGGAGAAGGCAGTTTTTTAAACCAAGTtcaaaaaagtcaaaatattccAAATAAACTTCAAAGTTCACCTCCTAAGCCCaagatatcaaataaaaatagaccaaaaaatataaaatgtcatCAATGTCCCAAGCGGTTCTCATCATTAGATGCATACAAAACTCATGTGTCTATCGCTCATATTGGTTCAAGAGGATTTCAATGTAAAACttgctttaaaaaattccCTCGCAAGAGAGAGCTTGATAGGCATATATCATTAAATTGTGAACCTAAAACCTTTCCCTGCACTCAGTGtgacaaaaagtttaataataaagataaactAGATAAGCATGAGGAAACTCATGAATGCTTGGTTGTGAATATGCCTTGCATTGAGTGTGGTGctacttttgaaaaaaaggcTGACTTAGTGGCCCATATCAAGTCTCATTTCACTGAAAACTATGATGAAAAAAGGCAGAGTTCagtgaatgaaataaaaaaagataatgaaCCTGTGTTCACTTTATCCGGAACATTTTACGATTTAGAAACTTGA
Protein Sequence
MEDSFIIANLHSLCRLCLNRSAIMISIFGPVPDDETNCTLTSKIAECFELQMDPSDGLPGRICYRCLFKVDKCSKFKLQCIQNETRLRQIANRHRELDSINPSDMIGFNFPKPQDILKPKAENYIVEDSVVMVVDPSLDYDSSEESDNVVDHADEEVHDHDNVPEGEPMADSFFKNVFMCQYCDQAFVSQEKCNDHELKYHDPNLPYKCIECSLVFGERTQHIQHIRQVHGNDKPYHCPECNKSFGRRSDLRKHSIVHTGIRPYQCQYCLKSFSRNTNLSKHLRIHAGHKPHVCPLCPRSFVAKGDLQRHVLIHSGMKPYACRKCPLTFGRRDKLIKHEVRHGPISPDHKNIELETEQNMIVNVNPFNNLLTSPSQINLDALNSFELPRVPDHIMGEGSFLNQVQKSQNIPNKLQSSPPKPKISNKNRPKNIKCHQCPKRFSSLDAYKTHVSIAHIGSRGFQCKTCFKKFPRKRELDRHISLNCEPKTFPCTQCDKKFNNKDKLDKHEETHECLVVNMPCIECGATFEKKADLVAHIKSHFTENYDEKRQSSVNEIKKDNEPVFTLSGTFYDLET

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
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80% Identity
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