Cnem003864.1
Basic Information
- Insect
- Choreutis nemorana
- Gene Symbol
- -
- Assembly
- GCA_949316135.1
- Location
- OX438598.1:9911571-9915098[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 9 1.1e-06 8.5e-05 23.2 1.1 2 23 166 187 165 187 0.97 2 9 0.00021 0.015 16.1 3.5 2 23 195 216 194 216 0.97 3 9 0.00062 0.046 14.6 0.5 1 23 222 244 222 244 0.97 4 9 8.8e-06 0.00065 20.4 2.4 1 23 250 272 250 272 0.96 5 9 5.2e-06 0.00039 21.1 0.2 3 23 280 300 278 300 0.97 6 9 3.3e-05 0.0024 18.6 0.3 3 23 308 328 306 328 0.97 7 9 0.022 1.6 9.7 5.4 1 23 334 356 334 356 0.98 8 9 0.00013 0.0097 16.7 0.5 1 23 362 384 362 384 0.97 9 9 4.6e-05 0.0034 18.1 4.3 1 23 390 412 390 412 0.97
Sequence Information
- Coding Sequence
- ATGGCTAACAACTTggactttaataaaatatgtcgGGCATGTTTGTCGGACGCCCAACCGTTAAAAGATCTGTTTACTGTATGTTCCCCTGAAGTGTTTAAGTATTGTACATCAGTAGAAATATCCAATAACGACAGACTGCCCAGGCTTGTGTGTCAAACATGTCTAGAGTTACTGAACAAGATATATTTCTTCAAACAAGTTGTTATAAGGTCCAATCTAATTTTAAGACAACAATGTGTAAAGTTAAAGCAGGATGATCACCTACAAAATGAACGGGATCTGTTGGAGGTGAACATTACAGAGCTAAGTGACGTCCATCAGGCCACTGGTTCCAACATTATGCAGGGGCAGAGCTGTCAGATGGAACAGCACATGCAGCAGGAGACAACGCAACCAATTGAAGAAGAGGAACCACAGAAAACAAAaaaaaagaaaacaaaatacaagaAACCAGCTGTGGCACCACGGCCAAGACCTAAGTCAGAGAGAATAAGATGTCCAATATGCGGGAAACATTTCCAGAAATATGACAACTTTGAAGCACACATGCGTCTTCACTTTGGAAAAacgCCAGACATCAAATGCCGTCACTGCGACAAGACGTTCCAGACGATGCGGAGCCTGAACAGCCACGAGCGCATCCACACCGGGGTGCGTAAATACCAGTGTCTTACCTGCGACAAGAGGTTCGCCTACCTCAACGTCCTCAAGAACCATGAGCTGATACACGCTGGCATTAAAAACCACGCGTGCCACGTCTGCGATGCAAGGTTCACGCAATCATACAACTTAAAGGTACATTTGGAATCTCACAGCAATGAAAAGAACTATGGGTGCTATCAGTGTGGGAAGAAGTTTGCGCAGCCCGGGAATCTCAAGATACATCTCATCAGACACACTGGAGTCAAGAACATAGCTTGCACTATGTGTGacatgaaattttacattaagGGGGATCTCATAAAACACATGCGGTCCCATTCGTCGGATAAACCATTCTCGTGTGATTTCTGTGAGAAGACATTCAAATGCAAGAGTTTCCAAGTTGTACACATGAGAACACATACAGgtGAAAGACCATACGCCTGCGATCTCTGCCCAAAGAAATTTATGGCAAAGAAAGATTTGAGGAACCATAGGATGATTCACACTGGAGAGAAACCGCACAAGTGCACGCTCTGCAACCAGGCGTTTATTCAAAAATGCGCTCTAAACCGTCACATGAAGGGCCATATTAAAGGAACGGAAGACCATCACGCGCTCCAGAACCGGCCTCAATTACAAAGTATGCAGAATTTAACTCCGCCTATATCCATGGCGTACCCTGATTGGAGGAATGAGTCCTCAGGGTCTTTATACAAAGAGATGGAGATGTTAGCAAAACAGAGGGATGGGAAATGA
- Protein Sequence
- MANNLDFNKICRACLSDAQPLKDLFTVCSPEVFKYCTSVEISNNDRLPRLVCQTCLELLNKIYFFKQVVIRSNLILRQQCVKLKQDDHLQNERDLLEVNITELSDVHQATGSNIMQGQSCQMEQHMQQETTQPIEEEEPQKTKKKKTKYKKPAVAPRPRPKSERIRCPICGKHFQKYDNFEAHMRLHFGKTPDIKCRHCDKTFQTMRSLNSHERIHTGVRKYQCLTCDKRFAYLNVLKNHELIHAGIKNHACHVCDARFTQSYNLKVHLESHSNEKNYGCYQCGKKFAQPGNLKIHLIRHTGVKNIACTMCDMKFYIKGDLIKHMRSHSSDKPFSCDFCEKTFKCKSFQVVHMRTHTGERPYACDLCPKKFMAKKDLRNHRMIHTGEKPHKCTLCNQAFIQKCALNRHMKGHIKGTEDHHALQNRPQLQSMQNLTPPISMAYPDWRNESSGSLYKEMEMLAKQRDGK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -