Basic Information

Insect: Choreutis nemorana
Gene Symbol: -
Assembly: GCA_949316135.1
Location: OX438624.1:2852773-2877534[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 21 2.5e-05 0.0019 19.0 1.7 1 23 379 401 379 401 0.98

2 21 0.08 5.9 7.9 1.8 2 20 441 459 440 461 0.91

3 21 0.011 0.84 10.6 0.3 3 23 730 751 729 751 0.95

4 21 4.6 3.4e+02 2.4 0.1 3 17 758 772 757 777 0.84

5 21 0.0082 0.61 11.0 0.1 2 23 869 890 868 890 0.95

6 21 0.13 9.9 7.2 3.3 2 23 905 926 904 926 0.96

7 21 3e-06 0.00022 21.9 3.3 1 23 932 954 932 954 0.98

8 21 0.00086 0.064 14.1 0.6 2 23 960 981 959 981 0.96

9 21 0.0064 0.47 11.4 0.6 1 23 988 1011 988 1011 0.93

10 21 2.5 1.8e+02 3.2 1.8 2 20 1019 1037 1019 1037 0.92

11 21 0.0003 0.022 15.6 0.2 3 23 1050 1071 1049 1071 0.96

12 21 0.00057 0.043 14.7 0.6 1 23 1282 1304 1282 1304 0.98

13 21 0.0043 0.32 11.9 2.3 2 23 1312 1333 1311 1333 0.97

14 21 0.71 53 4.9 0.6 1 23 1337 1360 1337 1360 0.94

15 21 0.041 3 8.9 1.2 1 23 1367 1390 1367 1390 0.96

16 21 0.00022 0.017 16.0 3.4 1 23 1396 1418 1396 1419 0.95

17 21 0.00024 0.018 15.9 2.5 2 23 1425 1447 1424 1447 0.94

18 21 0.91 68 4.6 5.4 5 23 1465 1484 1452 1484 0.78

19 21 0.0019 0.14 13.1 1.9 1 23 1490 1513 1490 1513 0.96

20 21 3.8e-07 2.9e-05 24.7 1.2 1 23 1518 1540 1518 1540 0.98

21 21 0.021 1.6 9.8 1.8 5 23 1549 1567 1548 1567 0.94

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	21	2.5e-05	0.0019	19.0	1.7	1	23	379	401	379	401	0.98
2	21	0.08	5.9	7.9	1.8	2	20	441	459	440	461	0.91
3	21	0.011	0.84	10.6	0.3	3	23	730	751	729	751	0.95
4	21	4.6	3.4e+02	2.4	0.1	3	17	758	772	757	777	0.84
5	21	0.0082	0.61	11.0	0.1	2	23	869	890	868	890	0.95
6	21	0.13	9.9	7.2	3.3	2	23	905	926	904	926	0.96
7	21	3e-06	0.00022	21.9	3.3	1	23	932	954	932	954	0.98
8	21	0.00086	0.064	14.1	0.6	2	23	960	981	959	981	0.96
9	21	0.0064	0.47	11.4	0.6	1	23	988	1011	988	1011	0.93
10	21	2.5	1.8e+02	3.2	1.8	2	20	1019	1037	1019	1037	0.92
11	21	0.0003	0.022	15.6	0.2	3	23	1050	1071	1049	1071	0.96
12	21	0.00057	0.043	14.7	0.6	1	23	1282	1304	1282	1304	0.98
13	21	0.0043	0.32	11.9	2.3	2	23	1312	1333	1311	1333	0.97
14	21	0.71	53	4.9	0.6	1	23	1337	1360	1337	1360	0.94
15	21	0.041	3	8.9	1.2	1	23	1367	1390	1367	1390	0.96
16	21	0.00022	0.017	16.0	3.4	1	23	1396	1418	1396	1419	0.95
17	21	0.00024	0.018	15.9	2.5	2	23	1425	1447	1424	1447	0.94
18	21	0.91	68	4.6	5.4	5	23	1465	1484	1452	1484	0.78
19	21	0.0019	0.14	13.1	1.9	1	23	1490	1513	1490	1513	0.96
20	21	3.8e-07	2.9e-05	24.7	1.2	1	23	1518	1540	1518	1540	0.98
21	21	0.021	1.6	9.8	1.8	5	23	1549	1567	1548	1567	0.94

Sequence Information

Coding Sequence: ATGTCCGAGAAAAACCGAAAAAGGTGTAGAAAGTCTAAACTGACGTTACGGGAGTGCAACGGCGTTGATAATGAAGAATTGAACATCGTGCAGatTTTATCATCAGATGACGAATATACGGAAAAAAAGTTTAACAGCAATGATGTTGTCATTAAGAAAGAGAAACCTTGTTCATCATCATCTTTGGATAGCATGGATAAAATTGAGAgtacaaatacaattattaagaAGGAGATTTTTGACGAAGACGATATTACCGATATCAAACCGATGGCAGCTGCGCCGCCACCAATGGAGTTCTCAATTAAGGTTGAAATAGAGAATTTCGATGAAGAGATAGCGGAAATAGAAAGACTCTACAACGAAAGCAAGATGGACTTTGGCAGTGTGTCAAAtaaagatgatgatgatgatgaaaagaAATTCAGTGAAGAGAAATCATACTACAGTGCTATGAATATTGTCAACACATCACCAGTTGATGGTACGTTGATGGAATCTGATGATCCTATCTTACTCAACCCTGATGAACCGGAAATGAATCATCGGATAACAGAAGCCATGATAATAGAAGAGATTGATCGTATATCTAAAGAGTCTACATCAGAAGTTGATAGAAAAATCCAATTTGGACTCAGCCGTTACTGGCAAAGACCTTCCATTAGTCTACCCGAAGATTACTTTGATAGTTTGATACAAGAgaacataaataaatggaaaatCTGGCACAGAAATAGTAGAGGACGATGCATTCCTTTTTTGTTCAAATGCTATGTATGTAAACTTGGTTGGTGGCGTTTGTTCGCTTTCAGAGAACATGTAGCTAAACATGTAGACGATTTGTCAATAGAGTGTGAGTTTCTTTACAACGAATGCAATCTGATAGCGTTTTTAGGACCAAAACCTGAAATAGAAACAGTAGATATATTTGATGGTTCAGACTGTCCATTATGCGGTGAATGCTATGATGAACATGTCATAGACCCAACTGTAAAATTACCttatgtttgtaaacattGCTTATCCTGTTATACAAGCTGCCAAGTAAAAGCAATCCACCAGAGCCAGTGCTATAAATATAAGACGCAACTCTACAATACTTGTAAGCAACACTCTGAAGTCTTCAGTGATGAATTCACTTGCCCAGTCTGCAAGTTAAGCTTTTACACGGAGAGATTACTTAACAAGCACATGTTTACTCATTTGGTCTGGTCAGACATCCCCAATGAAAATTCATCAAGGCACTGTCTAAATTGCAACACCAAGGCATTTGGTCCCAACCACATATGCACCGAACCACACCAAACAATGAAGCGTTCTTCCTGCGTACACTGCAATCTTCAATTCAAGCGTAAATTCCAATATCAAGTGCATAACAAAGTGAACAGGGACAAAGTGGCGTGTTTTTTCTGTGGTTTCATGTTGAAACGCAGCTGTATGGACTTGTTGCATTATTGCGTGCACAGCGAAAACTATGTAAGAGCCTACCGCTGTAATTACTGCGAACATTTAAAGTTATCGTCTACCATCGATAATGCTAAGCGACACGCGTCTATGTTCCATCCTGGAAAGAAATACTTCAGAGCTGAAACAGACgtgGTGATACCGAAAACGTTTCTGGAGATTATTGAATTAGAAGAAGAGGACGAGAACATTATGAAGGCTTTCAAAGAAATGACTCACACCAAGGAACAGTGGTCTGTGAGCAAGAGTGGAAATCCGAAAATAAATgaaccaaaacaaaaatcgGCTGCGATCTCCGTGGTTAAACCAAACAATAATGAAAAGAAAGATCCAGAAGTCGCGGGAGAATCAGAAGATCTATCCGACTCTGGTAAGCAGATAGACTCAGAAATGAAGTCAAAGTCACAAAGGTTATATATAGAGAAGAGGTTTAAAACAGAAAAGTTAACATCGGTATTAAAACCAATTAAGCTTGAACACTCTAAAAGCATAGCTGTCAATGAAAGAAGCGAAGATAATCCAGTTAAGGTAATAAAATTAGAAGAGGCCATGGAATCTTGTGAATTGGACATAGatgtttcaatatttaaccCCGCAGAAAGTTCTGACGGACCAGACAGTAATACTGCGGAAATAATCAAGAAATGCAGGTGCAATTTCGAAGGGACCGTCCAAGGTTTTGAAGAGCATAAGACGGATTGTTACCACCATCAGGCGAAGGCCTGCACTAAGTGCGGCCGAGTTTTTCCATCGctgacaaaatatttaagcCATTTCGCTACTGATCACGGACTCGACAAGAATGCGTGCCCGGAATGTTTTGAGGTTTTTCCAATCAAAGACAAATTGAACCATGTCAACAGCCATATTAAGCAAATTGTCAAAGGATACTACATTATAGACAACCAGTTATCGAAAAGTTTGAATCATTGTGTAAAATGCAACGCAGTAGTGGAAAagAGAGACGTATTCCAACATTGGGAGAGTCATTTAAATGTTCAACATGAAGTTGGAATTGAGGAGGAACCATTGGAAAATTATAAGAATTCTATAACCGTAACTGTTGAGAACACACTGGAACCTGGTCTACTGGAGTTGGCACTGGAACGGATCTGCACCAGAGGGAAGCTGTCAAAGACGCCGTGCATGATCTGCGGCCGAGAGTTTCTAAGACAGTATGAATGGAAACGTCATATAATTGAGCATTTGCTGCTTGACGCCTACTCCAAAACAGGTGAACACGGCCTGGAGTGTCAGATATGCCGGCAGAGGTTCCAACAAAGCGGACAATATAAATGCCACATGAGGGAACACGCCAACTTCCCTATGTATAAGTGTTACATGTGCAACAAGACGTTCAGTGATTCGAGCAACTTTGCGAAACATAAAAAAGTGCATAACATAAGCGTTCTAGTTTGTgatatatgtcaaaaaaagtTCCAAATAAAGAAGACCCTTATCAAGCATATGGAGCTCCACGCGAAATCCGGCTCAAAATTCCAATGCGACAAATGCGATGAAATATTCCCTTTGGAGGTTTATTTAAGGAAGCATAAGTCCCTAAAACACGACGGCAAGAAACCGAATCCTAAATGTCACATGTGCAGGCAGAAATTCCCAACAACCAAGGAGAGAAGCGAACACATGTGGGATGTACATAAGTTGAGGCAGTATAAAGCAGATTGTCCTGTCTGTGGGGCGTCTTACAGGAAACTGTATACGTTAAAGCAGCATCTAAGAGAAGAGCATGGGGATTATGATGTACAGAAGCTTATATTAGTTGCCCGTAACGGTATGATGAGGGTTGAAGAGGTTAATTACTGGGATTTGACTGTGACGAATAAAGAAGGTGTACCGTTCAACAATATGGTATGGACGAATATAGTATTGTACGATTCAACGGAAGTAAATATCAAAGAGGAAATAGATGATGAGATTGGAGATGTCTATTGCAATATGaaaaatgatgatgataacAATGTATGCGATGACAATGGACTTGATAAtgCTCATTTCGATGACATTTGCGACTCAAAAAGCTATGAGATTGATATAGATGAAAACAAAGACGACGATTTGCCGTTGCAGCTGTTGAGGGAGCAATTAAATCATTCAGAAATCTTATTGTTTGACCAAAACCAAATAGCAGaagacttaattaaaatagagaATGAAGAGAAACCGTTAAAAAAGAAGCACAAAGACAGAGATAGGAAACGCAAGTCGAAGAAgaacaaaagaaacaaaacacCAAGGGAGGGTTTCAGTTCTAGAATGAAGCAAGAGACAGACGAGTATGTAGTCATCAAATTATCCAAAGAACAGGTTCGGGAAGAAATGATCGAGAGGTCTAAGACCGACCACTATTTGGGGTATCCCTATAGGTGCGATGAGTGCGTCAAAGGATTCAACTTTTCTGACGTCCTCAAAAACCATATGGAGTATCACACCGAGaaacgTGGTCCATTAAAATGTGACATTTGTTCCCAATACTGCCGGAACGCTACAAGTCTAAGGGGTCATATGAAATCACACACGACGAGGTATGAATGCAAGCTATGCGGCGTTGTACGTCCAGCGAGACAACACCTACTGGATCATTATTATTCCACTCATCGTACGTTGCTGGCGGCTTTTACGTGCACGCAATGCGAGTTCACCACCAAcaaaCGTGCCAATATACAAAGgcatgttttaataaaacataagatATCGGACAGCCACACCTGTGAACTATGCGGGAAGATTTACAGAACGATCGAGTCATTCAGAGTGCATATGATGCGTCACCACAGCGACAAGAAGTTAAAGTGCACGCAATGTCCGTGCACTTTCGTGTACAAATCCACGTTAAACAAGCACGTCCGTGACGTGCACGGAGGCACGCAATACTACTGCGTTGAATGCGACAAACGGTTCAAAAGTGATCACTGCAGTGAGGTATTCACGACCGCTTCAAGTTTAGACACCCACTTGGTAAAAGTCCACTCCGCTGTCAAGAGGCACGCCTGTTCAGTTTGCTCCAGGAAGTACACCACCAGAATCGCCTTGAGCACTCACATTAGGAGCAAGCACGAATACAACCAGTTTATATGCGACGTATGTGAAAAGAGCTTCTCTAAACGCTATTTACTGGTACGCCACATGCGCACCCACACCGGCGAGAAGCCGTACGCCTGCCAATGCGGCGCTTCATATTCACAATCACATCAACTAAAACGGCACGAGGCCAAACACAAGGTAATACTATTTAAACACCACCTGGAATCCATGGCTAATCAAAAAAaaagaaGACCCACCCCAAGAAGAATTGAAGACTGA
Protein Sequence: MSEKNRKRCRKSKLTLRECNGVDNEELNIVQILSSDDEYTEKKFNSNDVVIKKEKPCSSSSLDSMDKIESTNTIIKKEIFDEDDITDIKPMAAAPPPMEFSIKVEIENFDEEIAEIERLYNESKMDFGSVSNKDDDDDEKKFSEEKSYYSAMNIVNTSPVDGTLMESDDPILLNPDEPEMNHRITEAMIIEEIDRISKESTSEVDRKIQFGLSRYWQRPSISLPEDYFDSLIQENINKWKIWHRNSRGRCIPFLFKCYVCKLGWWRLFAFREHVAKHVDDLSIECEFLYNECNLIAFLGPKPEIETVDIFDGSDCPLCGECYDEHVIDPTVKLPYVCKHCLSCYTSCQVKAIHQSQCYKYKTQLYNTCKQHSEVFSDEFTCPVCKLSFYTERLLNKHMFTHLVWSDIPNENSSRHCLNCNTKAFGPNHICTEPHQTMKRSSCVHCNLQFKRKFQYQVHNKVNRDKVACFFCGFMLKRSCMDLLHYCVHSENYVRAYRCNYCEHLKLSSTIDNAKRHASMFHPGKKYFRAETDVVIPKTFLEIIELEEEDENIMKAFKEMTHTKEQWSVSKSGNPKINEPKQKSAAISVVKPNNNEKKDPEVAGESEDLSDSGKQIDSEMKSKSQRLYIEKRFKTEKLTSVLKPIKLEHSKSIAVNERSEDNPVKVIKLEEAMESCELDIDVSIFNPAESSDGPDSNTAEIIKKCRCNFEGTVQGFEEHKTDCYHHQAKACTKCGRVFPSLTKYLSHFATDHGLDKNACPECFEVFPIKDKLNHVNSHIKQIVKGYYIIDNQLSKSLNHCVKCNAVVEKRDVFQHWESHLNVQHEVGIEEEPLENYKNSITVTVENTLEPGLLELALERICTRGKLSKTPCMICGREFLRQYEWKRHIIEHLLLDAYSKTGEHGLECQICRQRFQQSGQYKCHMREHANFPMYKCYMCNKTFSDSSNFAKHKKVHNISVLVCDICQKKFQIKKTLIKHMELHAKSGSKFQCDKCDEIFPLEVYLRKHKSLKHDGKKPNPKCHMCRQKFPTTKERSEHMWDVHKLRQYKADCPVCGASYRKLYTLKQHLREEHGDYDVQKLILVARNGMMRVEEVNYWDLTVTNKEGVPFNNMVWTNIVLYDSTEVNIKEEIDDEIGDVYCNMKNDDDNNVCDDNGLDNAHFDDICDSKSYEIDIDENKDDDLPLQLLREQLNHSEILLFDQNQIAEDLIKIENEEKPLKKKHKDRDRKRKSKKNKRNKTPREGFSSRMKQETDEYVVIKLSKEQVREEMIERSKTDHYLGYPYRCDECVKGFNFSDVLKNHMEYHTEKRGPLKCDICSQYCRNATSLRGHMKSHTTRYECKLCGVVRPARQHLLDHYYSTHRTLLAAFTCTQCEFTTNKRANIQRHVLIKHKISDSHTCELCGKIYRTIESFRVHMMRHHSDKKLKCTQCPCTFVYKSTLNKHVRDVHGGTQYYCVECDKRFKSDHCSEVFTTASSLDTHLVKVHSAVKRHACSVCSRKYTTRIALSTHIRSKHEYNQFICDVCEKSFSKRYLLVRHMRTHTGEKPYACQCGASYSQSHQLKRHEAKHKVILFKHHLESMANQKKRRPTPRRIED

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -