Cnem018508.1
Basic Information
- Insect
- Choreutis nemorana
- Gene Symbol
- -
- Assembly
- GCA_949316135.1
- Location
- OX438620.1:1431138-1433735[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 0.0064 0.48 11.4 6.8 1 23 151 174 151 174 0.95 2 17 7.4e-06 0.00055 20.6 1.6 1 23 183 206 183 206 0.97 3 17 0.003 0.22 12.4 0.5 3 23 220 241 219 241 0.97 4 17 0.00037 0.027 15.3 2.0 1 23 250 273 250 273 0.97 5 17 1.7e-05 0.0013 19.5 4.0 1 23 284 307 284 307 0.97 6 17 0.00013 0.0097 16.7 0.4 2 23 336 358 335 358 0.96 7 17 0.0028 0.21 12.5 3.0 2 23 368 390 367 390 0.96 8 17 0.0022 0.16 12.9 0.5 2 21 408 427 407 430 0.94 9 17 0.11 8.2 7.5 1.1 1 23 438 461 438 461 0.91 10 17 0.00023 0.017 15.9 2.7 1 23 466 489 466 489 0.94 11 17 0.00013 0.0099 16.7 1.2 2 23 501 523 500 523 0.97 12 17 0.11 7.8 7.6 0.2 1 23 546 569 546 569 0.92 13 17 0.78 58 4.8 0.1 2 23 579 599 578 599 0.93 14 17 0.0068 0.5 11.3 2.1 2 23 605 626 604 626 0.97 15 17 8.3 6.2e+02 1.6 1.9 3 23 634 656 632 656 0.89 16 17 0.0056 0.42 11.6 0.2 1 23 692 714 692 714 0.97 17 17 0.072 5.4 8.1 1.9 1 23 720 743 720 743 0.97
Sequence Information
- Coding Sequence
- ATGTCCCATATAATCACCGAAAATGTCAAATCAAGGAAAGATGAAATTCCAACAAGAAAAGATCCAACCTCTTTTTTACCGGAGGAAGAAATGACGTACGAGattaaaaagaagaagaagaaaaagaaacgGGACAAAGCGGAAGACCCCTTCAAAGGGATAGATGACTCAACCATCATAAATAGCAAGTTCTGTTCAGTGCCTACTTTAGATATGTGCATGGACCCGGAGGTCACGATAAAAGTGGAAAATATTGAAGTAGAACTAGATTTTAATGATTTTGAATATGATGCAGCTACAATCAATGAGAGTCAAGAGCTGAGTCAAGACGTTTACGAGCCGGCTGTCAAAATAGAACAGCAGAACCATGAAGCTGTAATATTGACGTTTGAGAACGTGATTAACGAAAGCAATGAGCAGGAAACATTCAAACCCGAAACCCCAGCGACGCATTTCTGTAAGATTTGCCATCTGGTGTTCAAATCCGTGAAGACTTTAAAAATGCACCAAAAACGAAAGCACAAAGTGTTTAGGAAGTCTTTTATACATGTATGCGACTACTGTGGAATGTCGTATGACCAGAAGACTAGCTTACAAGCGCACATTAAAAGAAAGCACAAATCAAACGTATCGGAAGAAGATCTCTTAGAGAAGATATGTGAAATTTGCTCATTAGTTTTTAAAGGTACCGCTAGGTTGAGGTTGCACATGCGTAGAAAGCATGACCTGTTTGAAGACTCGTTTAAATATTCATGCGGTGACTGCGGCCTATCTTATGATAAATATAGAAGCTTGACAGTTCACATGCATAGGAAACATTCAACTAACAAGCCAATTTTGAACCATTTATACAGTTGTCCATTTTGTcctaaagtttttaataggAGAGAGACTTATTGCCGTCACATTCAGAGAAAGCACAGGgtagatgatgatgatgaagagcATAGAAACATAACTGATGAACTGTTAGAAAGCAGTCGTGATGAACGTACAGGGGAAATTGTTTGCAAAGAATGCCCATTAGTATTTTCTTCTATAAATTTTCTCAAACTACACATGAGACGGAAGCATAATGCATTGAATGAAGACTTTTCACTTAAGTGCAGGATTTGCCATATGTCGTATGATAAAATAGAAAGCTTAAAACGACACGTTAGAAGAAAACACTACCCTGGAAAATCAGATATGAAATTGAAGGGTCAAATTAAGGAAATAAAAGAATGTGACCTGTGTGGATTGATTTTCGCCTCGCAAGGTGGTTTAGCTAAGCATTTACGTTGTACGCACAAAATAGATAGTCCAAAGACATTTTTCTGTAATGTTTGTAACGAGGGTTTCTATGAGAAACGCCAACTGAAACCTCACTTCCTAAAAGTGCATTTAAAAGTGTCATATACTTGTAAAGTTTGTAAGAAGATATTTAAAGCGAAAGAGAGTTATAGAcgccatattttatttaagcatCCCTCAAATGATATTGCTCAGGAACAAATGCAAAAATGTGATCAGTGTACAGAAACTTTTGTAGACGAATTTGAACTCTGCCGACATATAAATATGGCCCACAATATAGCTTTTAAATCTGAAAACGTAAAATTAGAAGTTAAAGAAGAAGAACCGCCTAAACCTACATTTCAGTGTATAAAATGCCCAGACTCCTATGATACTTGGGATGACTTAAAAGTTCATTACGAGCAAAACCATAGAAGGCATGAGATGAAAGAGGAAACACAGTGTCAAGTTTGTGGAGAGCTTATATCGTCTGCAGATATAACGAAGCACATGAAGTTGCATAACGAAATAGAACTACAGTGTAAATACTGcgaatttaaaagcaaaaacaaaGCAAGTATGACGCAGCATCTGTTACGGCATAAAAACGCCAAAACAATTCATTGCACGTACACCGGTTGCTCTTATAAAACGTTTTATGAAGAAGCTATGAGGAAACACCAGGACAAACATTCAGAAATAGGTGTCAAACTACAATGTGCGAAGTGCCCCTTCCAAACGATGAATAAATATATCCTGAAATACCATGAAGAAGCACACGAGACTGGGAAAAAGAGATATCAATGCGACCAATGTGATTACGCGACTATCTTACCAGCGAATCTTGTTCAGCATAAATATAAGCATTCAGCTGAGAAAAGGTTTAAATGTGAAGTTTGCCCTTTCGCTACTAAATACAACACGTCGCTGCGTTTTCACGTCAGAAAGAAACACTGTGATTTACCGACATTCAGCTAA
- Protein Sequence
- MSHIITENVKSRKDEIPTRKDPTSFLPEEEMTYEIKKKKKKKKRDKAEDPFKGIDDSTIINSKFCSVPTLDMCMDPEVTIKVENIEVELDFNDFEYDAATINESQELSQDVYEPAVKIEQQNHEAVILTFENVINESNEQETFKPETPATHFCKICHLVFKSVKTLKMHQKRKHKVFRKSFIHVCDYCGMSYDQKTSLQAHIKRKHKSNVSEEDLLEKICEICSLVFKGTARLRLHMRRKHDLFEDSFKYSCGDCGLSYDKYRSLTVHMHRKHSTNKPILNHLYSCPFCPKVFNRRETYCRHIQRKHRVDDDDEEHRNITDELLESSRDERTGEIVCKECPLVFSSINFLKLHMRRKHNALNEDFSLKCRICHMSYDKIESLKRHVRRKHYPGKSDMKLKGQIKEIKECDLCGLIFASQGGLAKHLRCTHKIDSPKTFFCNVCNEGFYEKRQLKPHFLKVHLKVSYTCKVCKKIFKAKESYRRHILFKHPSNDIAQEQMQKCDQCTETFVDEFELCRHINMAHNIAFKSENVKLEVKEEEPPKPTFQCIKCPDSYDTWDDLKVHYEQNHRRHEMKEETQCQVCGELISSADITKHMKLHNEIELQCKYCEFKSKNKASMTQHLLRHKNAKTIHCTYTGCSYKTFYEEAMRKHQDKHSEIGVKLQCAKCPFQTMNKYILKYHEEAHETGKKRYQCDQCDYATILPANLVQHKYKHSAEKRFKCEVCPFATKYNTSLRFHVRKKHCDLPTFS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -