Cnem013933.1
Basic Information
- Insect
- Choreutis nemorana
- Gene Symbol
- -
- Assembly
- GCA_949316135.1
- Location
- OX438612.1:9469453-9470874[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.00016 0.012 16.4 0.9 2 23 160 181 159 181 0.98 2 11 0.0023 0.17 12.8 5.2 1 23 187 210 187 210 0.97 3 11 0.0003 0.022 15.6 0.1 1 23 219 241 219 241 0.98 4 11 1.3e-05 0.00099 19.8 3.6 1 23 247 269 247 269 0.99 5 11 5.2e-06 0.00039 21.1 0.3 1 23 275 297 275 297 0.96 6 11 4.1e-06 0.00031 21.4 1.8 1 23 303 325 303 325 0.99 7 11 9.8e-07 7.3e-05 23.4 1.6 1 23 331 354 331 354 0.95 8 11 0.034 2.5 9.1 0.6 5 20 360 375 358 378 0.91 9 11 0.067 5 8.2 0.9 2 23 385 407 384 407 0.93 10 11 0.095 7.1 7.7 2.3 1 23 413 438 413 438 0.91 11 11 1.1e-05 0.00084 20.0 0.2 1 23 444 467 444 467 0.94
Sequence Information
- Coding Sequence
- ATGGATGTTAAAACTTGTAGAGTATGCTGTGATGCCAAAGGAAAAACACACATATTTGATAACACAGGTGATATAACTATTAGTTCTAAAATAATGTCGTGTTGCGCCAACTTGACCATATCCTGTGACGATGGGCTGCCAAAACATATTTGTGATACCTGTGAAGATGAACTTGAATCCTGTTATCGATTCGCACTCAAATGCAAAGCATCCGACAAAAAACTACGAGCAAAAGCGTTGACTTCGCAGGAACTACAATCTAGCGATATAAAGATTGAAGTAAAGACAGAGGAACTCAATAGTGATGCAGATAATGTTTTAGACTTTGGTTTTAACGATACCGATGATTTTTCTctaattaaagttttcaaacatAGTAAAGTAAGCTCTAAAATTAAACAGACATGCGATGCAAAATCTCTTAAAAGACCAAAAAAGAATcgaattaaaaagaaatacaataaaGACCTGTCGAGCCAATGTTCAGTTTGTGGTCGTGTGTGCCTGTCTCCGTCGACTCTGAGCGTGCACATGAGATCGCACACGGGAGAGAAGCCGTACAAATGCCAGCACTGCGACAAGCAGTACAAAGACCTCGGTGGAGTCAACAGACACACTAGCAGGTGCCACTATCCAGAGAAGAGAGAAAGGAATTTCATCTGCGACACATGCGGAAAAGGATTTTTATCCAAATATGCTGTGAGAATACACATCAGAATTCATACAGGGGAAACACCTTATAAATGTCCACTTTGTACCAAGAGGTTTACACAGATAAGTACAATGCAGCGCCACAAAAAACGACATACAGCAGAGAAAGACTACGCCTGCGAAACCTGTTCTAAAAGCTTTGTCACTAAAGAAGAATTGAAAAATCACCTTGGAGTTCATTCTAATGAGAAAAAGTACACGTGTCCTCAATGCAACGTCatgtttaaatatgaaaacagTCTTAAAAAGCATATAAAGCGACATTTAGAaccaaatagttttatttgcaaCTTTTGtggtaaaacatttaacactAGCGGAAATTTGAAGAACCATACGGATCGTCAGCATTCGGAGAAGTCAGGGTACTGCGGGCAGTGTTCCAAGCACGTGTCCAACTTGGAGGTACACATGTGGCGGCACAACAACCAACGCCCTCTAAAGTGCGAACTCTGCACGAGTAGTTTCTACGAACCAAGAGCTCTAGCACATCATGTTAACTTTCGTCACAAAAATACTGACAAGTACAAGTGTCAAATAGAAGGTTGCCATCTAACATTTCCATCTAAGCACATGTTGGAATTTCACACGGCTAAATTACATACAAATCAAATTCTCTTTCCTTGTGAAATATGTTCCAGAGGGTTCTATAGGAAAAATGATCTTGCGAGGCATATGATTGGAACTCATAAACAAAGACTTCTTCAGTGA
- Protein Sequence
- MDVKTCRVCCDAKGKTHIFDNTGDITISSKIMSCCANLTISCDDGLPKHICDTCEDELESCYRFALKCKASDKKLRAKALTSQELQSSDIKIEVKTEELNSDADNVLDFGFNDTDDFSLIKVFKHSKVSSKIKQTCDAKSLKRPKKNRIKKKYNKDLSSQCSVCGRVCLSPSTLSVHMRSHTGEKPYKCQHCDKQYKDLGGVNRHTSRCHYPEKRERNFICDTCGKGFLSKYAVRIHIRIHTGETPYKCPLCTKRFTQISTMQRHKKRHTAEKDYACETCSKSFVTKEELKNHLGVHSNEKKYTCPQCNVMFKYENSLKKHIKRHLEPNSFICNFCGKTFNTSGNLKNHTDRQHSEKSGYCGQCSKHVSNLEVHMWRHNNQRPLKCELCTSSFYEPRALAHHVNFRHKNTDKYKCQIEGCHLTFPSKHMLEFHTAKLHTNQILFPCEICSRGFYRKNDLARHMIGTHKQRLLQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -