Basic Information

Insect: Choreutis nemorana
Gene Symbol: -
Assembly: GCA_949316135.1
Location: OX438624.1:4358618-4370756[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 1.7e-05 0.0013 19.5 1.6 1 23 253 275 253 275 0.98

2 12 0.021 1.6 9.7 1.3 2 23 283 305 282 305 0.96

3 12 1.4 1e+02 4.1 1.1 1 23 309 331 309 331 0.90

4 12 0.00054 0.04 14.8 1.7 1 23 336 359 336 359 0.96

5 12 0.00036 0.027 15.3 1.3 1 23 364 387 364 387 0.97

6 12 0.2 15 6.7 0.3 3 21 397 415 396 415 0.95

7 12 3.7e-05 0.0027 18.4 0.4 2 23 428 449 427 449 0.97

8 12 0.00033 0.025 15.4 1.6 1 23 455 478 455 478 0.97

9 12 0.00049 0.037 14.9 2.2 2 23 502 523 501 523 0.97

10 12 2e-05 0.0015 19.3 3.4 1 23 529 551 529 551 0.99

11 12 1.6e-05 0.0012 19.5 3.9 1 23 557 579 557 579 0.99

12 12 1.6e-06 0.00012 22.8 1.0 1 23 585 608 585 608 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	1.7e-05	0.0013	19.5	1.6	1	23	253	275	253	275	0.98
2	12	0.021	1.6	9.7	1.3	2	23	283	305	282	305	0.96
3	12	1.4	1e+02	4.1	1.1	1	23	309	331	309	331	0.90
4	12	0.00054	0.04	14.8	1.7	1	23	336	359	336	359	0.96
5	12	0.00036	0.027	15.3	1.3	1	23	364	387	364	387	0.97
6	12	0.2	15	6.7	0.3	3	21	397	415	396	415	0.95
7	12	3.7e-05	0.0027	18.4	0.4	2	23	428	449	427	449	0.97
8	12	0.00033	0.025	15.4	1.6	1	23	455	478	455	478	0.97
9	12	0.00049	0.037	14.9	2.2	2	23	502	523	501	523	0.97
10	12	2e-05	0.0015	19.3	3.4	1	23	529	551	529	551	0.99
11	12	1.6e-05	0.0012	19.5	3.9	1	23	557	579	557	579	0.99
12	12	1.6e-06	0.00012	22.8	1.0	1	23	585	608	585	608	0.97

Sequence Information

Coding Sequence: atggaagaaaaattatattgtagaTCATGCTTAGTTACAGATGTGGAATTGTGTGATATGTCTTctatgaatttaataaaaccttacGAAATTCTAACTGGAATTAAGGTATCACAAACGGATCTCCTGTCGCACTACATGTGCATATGTTGTAGAGTGTTActgttaaaatgtatttggtTCAAAGACAAATGTAAAAAGGCTGAAGATATTTTGAAGATGGCAACACAGACTTACAATGTTCAGATTCAAGAAAAATTCCTGAAGACAATAGACCGTTCCGGGTTAAAATTGGGTTTGAACCTTTCAAGTTCGCACCAAGAAAAGATAAGTTACCCAAATGAATTGGAAAGGAAAGAAATAGACATCAAGGAAGAAATGGTAGATGATTATTTCAGCGATGATTTCTTCATGAACAACGATACACCAGTCAAATCGGAGAGTCCGGTAAATGATTCGTTCACAGATCAAAGCGATGAAGAAAAGCTTTCCGTTGTAGCCAAGAAGAATAGTCTTAAAAAATtagatacaaataaaaaaactctaaaaaaagtattcaaaaaGAAACGGGTGAAGAAGGCGGTCAACAAAAGGGAAACGGATAATCCTTGGAAAGACGGATTGATGACTTCAAAGTCTGATAACGATCCAGTATTATTAGATAAGTTGGATACAACGTTTAAGgtatTAACAAAGGAAGAGGCCATAGCTGAACTGCAATCACGTAAGAAGTCGTTAAACTACATCCGCTGCTTGTTTAAATGCGACAAGTGCTATAAAGGATTTCAGACGGAgtcaactttaaataatcaCATGTCTATACATGATGCGAGAATGGGCAGTCTGGAATGCGACGTGTGTTTCCAACGTTACTCCAATAATCTCCGTCTAAGATACCACATAAAGAAAACACATCTGTACAGATATATATGTAGGCAGTGCGGTACATCCTCAAAAACTATATTCCGCGCCAAACTACATTACAAATGGCACCTAGGCTTCACATACAATTGTAAAATATGCGGAGCATCTTTCAAAAAAACGACTACGTACTTCACTCACGTCCGGCTTATGCACCCGAGCAGTAAGTACAAGTGCGACATATGCGACGCGAGCTTTGTAAGCGACAAGGGATTACAGCATCACAACAAGATGAGGCACTCGcaaATAATTCCAGTTTCGACATTGTGTAGTACTTGTCAAGTGAAGTTCCATGATGAAGCAGCATTGAAAGAACATCAGCAGTGCATGAGGGATGGCGTCTGCGATGCCAACACCAAGTCATGCCAGCAATGTGGGGTTGGTTTCAAAACGGAAGACGAACTGAAAGATCACCTACAGACTCATCCGAAACCGAAATCATTTAAATGTCCGATCTGCAACAAGATGCTGAGCAGCCACAAGACGTTAGGACAGCACTATGAAACGATTCACTTGGGTATAAAGCGCGGTGTACACGAGAACAGCCTCCTGAATGACGGTTCACACGTCAATGGGACGATCGTATGCGAGATATGCGGGAAGATATGCTCGAACAAACACGTGTACATAAGCCACCAGAGACAACACACGGGAGAAAAACCATTCCAATGTACGCTATGCCCCATGAAGTTCTGTCAGCTGCAAAATTTGCAGattcacacacgcacacacacaggGGAGCGACCATACAAATGCGATCAGTGCGATAAATCATTTAGATCTAAAGCTTGCGTGAATAGACACAGCAGAGTGCACACAGGGGCGAAGCCCTACGCCTGCCCTCACTGTGGAAAGTCCTTTACTCAAACTAACTCCGTAAAATTGCACATAAACACAGTACACTTCAAAATGCCTCAACCATACAGAAACCGGCGGAAACATCAGTAG
Protein Sequence: MEEKLYCRSCLVTDVELCDMSSMNLIKPYEILTGIKVSQTDLLSHYMCICCRVLLLKCIWFKDKCKKAEDILKMATQTYNVQIQEKFLKTIDRSGLKLGLNLSSSHQEKISYPNELERKEIDIKEEMVDDYFSDDFFMNNDTPVKSESPVNDSFTDQSDEEKLSVVAKKNSLKKLDTNKKTLKKVFKKKRVKKAVNKRETDNPWKDGLMTSKSDNDPVLLDKLDTTFKVLTKEEAIAELQSRKKSLNYIRCLFKCDKCYKGFQTESTLNNHMSIHDARMGSLECDVCFQRYSNNLRLRYHIKKTHLYRYICRQCGTSSKTIFRAKLHYKWHLGFTYNCKICGASFKKTTTYFTHVRLMHPSSKYKCDICDASFVSDKGLQHHNKMRHSQIIPVSTLCSTCQVKFHDEAALKEHQQCMRDGVCDANTKSCQQCGVGFKTEDELKDHLQTHPKPKSFKCPICNKMLSSHKTLGQHYETIHLGIKRGVHENSLLNDGSHVNGTIVCEICGKICSNKHVYISHQRQHTGEKPFQCTLCPMKFCQLQNLQIHTRTHTGERPYKCDQCDKSFRSKACVNRHSRVHTGAKPYACPHCGKSFTQTNSVKLHINTVHFKMPQPYRNRRKHQ

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -