Cnem009395.1
Basic Information
- Insect
- Choreutis nemorana
- Gene Symbol
- AAEL006684
- Assembly
- GCA_949316135.1
- Location
- OX438606.1:2004052-2009559[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 0.025 1.9 9.5 0.4 1 20 107 126 107 128 0.95 2 18 0.00033 0.025 15.4 3.7 1 23 139 161 139 161 0.97 3 18 6e-06 0.00045 20.9 0.1 1 23 185 207 185 207 0.97 4 18 0.17 12 6.9 1.1 5 23 215 234 212 234 0.94 5 18 8.9 6.7e+02 1.5 4.2 1 23 308 331 308 331 0.91 6 18 0.081 6 7.9 3.5 3 23 339 359 337 359 0.97 7 18 0.00038 0.029 15.2 2.1 1 23 364 386 364 386 0.98 8 18 5.7e-05 0.0042 17.8 2.9 1 23 392 414 392 414 0.97 9 18 0.00079 0.059 14.2 4.9 1 23 420 442 420 442 0.99 10 18 1.1e-05 0.00079 20.1 0.6 1 23 448 472 448 472 0.97 11 18 0.001 0.075 13.9 1.0 1 23 478 500 478 500 0.94 12 18 0.0003 0.022 15.6 1.2 1 23 506 528 506 528 0.98 13 18 0.00019 0.014 16.2 0.3 1 23 535 557 535 557 0.99 14 18 5.3e-05 0.004 17.9 3.8 2 23 564 586 563 586 0.96 15 18 0.14 11 7.1 0.3 1 23 592 615 592 615 0.91 16 18 0.0056 0.42 11.6 2.2 1 23 621 644 621 644 0.96 17 18 2.4 1.8e+02 3.3 1.5 2 19 649 665 649 666 0.85 18 18 0.6 45 5.2 0.1 3 23 674 693 672 693 0.93
Sequence Information
- Coding Sequence
- ATGTGTGACTATAAAGTGGGTGATTTGGTCTggGCCAAATTGAAAACCTACAGCCCTTGGCCAGGAAGGatCTCTATCCCGATTCCAGAGTTACATTTTCcgaaaaatttcaaaaactattggtgtatttatttatttggaataaataattatcAATGgatacataaatattacatcAAACCTTACAAGGAGTACAAGGAGGAAATACTCAAGGAATATCACACAACTGCTTTATCTCATGCAGTGACACAGCTAGAACTGTATATTGATAACCCTGAGgttGTAAACCCTTATGTAAAACTAGAGAGGACTGATATATATACATGTCATGGATGCACAGCTGCGTTTTTGACTCAAGAAGAGTTGGAATCACATTTGTCGCATCCTGTAGTGTTGTTGGAACGGGTTAAGATTTATGAATGCAAAATTTGCTGGCTATGTTTTACGGATCACAAAGAATATAAGAGGCACGCCTTGATACATGTCAAGGCTTTAATGCGAGAGGAGAAAAGGAAGGAGTTGTACGTTGATAGTGGGAGattcaaaaaaatctactcATGCCCTGAGTGTGATCTGCGGTTTGTTCAAGCAAGCACTCTGGAGACTCACCTGGATGTCCACCAGCCGTTCCCTCATGTCTGCCACTGCGGTATCGGCTACTACAAGAACTATGATCTGGCACAACACTTGAAGCTTGCCCACGGTGAGGACAAATCAGTTGTACAAGTTATTATGAAATCAGAACGGAAAGTTATTTACAAAGACTCTGAGGAAGATGTCTCCGAATCCAGTGAGGAGTCTGATCATAGCTATGTTAAGGTCAAAGCTAGGCCAAAGCTGAAAGCTGCCACCAGAACTAAACCCAGCCGACGTAGAAAGTGTGAAGAAAGGGATTTTATTCCAGAAATGGTTAATGGATCATACCACTGCCATGTCTGTTCATTAGAGTTTTTAACTGTAGCAAAATTCAATAAGCACTACTCAGAAAAACATCCCAGCGAAATGCCTTACGGCTGTGACAAATGCAGCAAAAAGTTCATGACTTATAGCTCTCACAAATTACATATGATCACACATGAAGATCCTAAATACAATTGTGaatattgcaataaaaaatttcACTTTAAGATACCCCTTGAGGTACATTTACGTGTGCATACAAAAGAAAAGCCATACTGTTGTAACATTTGCCAAAAACGATTCACTCAAATCAGTGCTTTGAACATACACAAACTGAGACACGCGGGAATCAGGAACTTCAAGTGCAAGCATTGTGACAAACGTTTCTTTGATCTCGGTAGCACAAAGCTTCATGAGAGAACTCACACTGGGCTGAAACCTTATGAGTGTACAGTGAAGAGTTGCAATAAGAAGTTTAGCGACCCGTCCGCTTACGCCCGCCACGTTAGAACCCACACGGGAGACATGCGATACGCTTGCATTTATTGCCCGAAAAAATTCACCGACAGTAGCGCCTATTACGTTCACAAAAAAAGACACGAAAACAAGAAAGATTTCGTTTGCTCTTTCTGCGAGAAGACGTTCTTGACTCTTTCTACATTAAGAATACATTTGAGGCTACATATCAAAATGGGGAATAATTACGAATGTGACATTTGTGGTAGTAAGCTTATATCAAAGGCGTCCCTATTTATGCACATGAAGAGACATATGGGTGGGGACATGCTGACATGCAAAGTGTGCTCAAAAGTCTgcaaaagtaaaacaaatctGCTTAGACATCAGCAAAAAGTTCACAAGATCGGTAAAGCTTATAAATGTGATGTTTGTAATCACGAATTTTGGGGTCCTGAAAAACTCAACATACACAAAATCAATGTCCAccaagataataaaatattcaattgcGACTATTGCGCCAAAAAattctggaaaaaaaaattgctgagAAAACACATTATCAAACAACACCTTAGATTACCGAAATGTTataactgtcaaaaatatttcactttgAAATCATTTGAGTCACATTTACCTAATTGCAAAGGTAAAATTTGTGGTATATGTGATAAAAGAATCCCTGTGACACAGTTAGAAGCTCATTTGTTGACACATGCTTAA
- Protein Sequence
- MCDYKVGDLVWAKLKTYSPWPGRISIPIPELHFPKNFKNYWCIYLFGINNYQWIHKYYIKPYKEYKEEILKEYHTTALSHAVTQLELYIDNPEVVNPYVKLERTDIYTCHGCTAAFLTQEELESHLSHPVVLLERVKIYECKICWLCFTDHKEYKRHALIHVKALMREEKRKELYVDSGRFKKIYSCPECDLRFVQASTLETHLDVHQPFPHVCHCGIGYYKNYDLAQHLKLAHGEDKSVVQVIMKSERKVIYKDSEEDVSESSEESDHSYVKVKARPKLKAATRTKPSRRRKCEERDFIPEMVNGSYHCHVCSLEFLTVAKFNKHYSEKHPSEMPYGCDKCSKKFMTYSSHKLHMITHEDPKYNCEYCNKKFHFKIPLEVHLRVHTKEKPYCCNICQKRFTQISALNIHKLRHAGIRNFKCKHCDKRFFDLGSTKLHERTHTGLKPYECTVKSCNKKFSDPSAYARHVRTHTGDMRYACIYCPKKFTDSSAYYVHKKRHENKKDFVCSFCEKTFLTLSTLRIHLRLHIKMGNNYECDICGSKLISKASLFMHMKRHMGGDMLTCKVCSKVCKSKTNLLRHQQKVHKIGKAYKCDVCNHEFWGPEKLNIHKINVHQDNKIFNCDYCAKKFWKKKLLRKHIIKQHLRLPKCYNCQKYFTLKSFESHLPNCKGKICGICDKRIPVTQLEAHLLTHA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -