Cnem004610.2
Basic Information
- Insect
- Choreutis nemorana
- Gene Symbol
- -
- Assembly
- GCA_949316135.1
- Location
- OX438599.1:7859543-7868533[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 23 0.0073 0.54 11.2 0.6 3 23 294 315 293 315 0.96 2 23 7.7 5.7e+02 1.7 1.1 4 23 675 696 673 696 0.84 3 23 0.23 17 6.5 0.2 1 21 701 721 701 722 0.96 4 23 0.0011 0.079 13.8 0.7 3 21 798 816 796 817 0.94 5 23 0.56 41 5.3 0.0 3 23 826 847 824 847 0.89 6 23 0.0058 0.43 11.5 0.4 3 23 866 887 864 887 0.96 7 23 0.00014 0.01 16.6 1.6 1 23 893 916 893 916 0.96 8 23 0.063 4.6 8.3 0.0 1 23 942 965 942 965 0.91 9 23 0.015 1.1 10.2 3.4 1 23 970 992 970 992 0.97 10 23 0.0034 0.25 12.2 0.2 1 23 998 1021 998 1021 0.97 11 23 0.0016 0.12 13.3 3.5 1 23 1034 1056 1034 1056 0.98 12 23 0.00014 0.01 16.6 1.8 1 23 1104 1127 1104 1127 0.97 13 23 0.0015 0.11 13.4 3.3 1 23 1184 1207 1184 1207 0.96 14 23 0.00086 0.064 14.1 2.1 2 23 1233 1255 1232 1255 0.95 15 23 0.068 5.1 8.1 0.1 2 23 1261 1283 1260 1283 0.93 16 23 0.0058 0.43 11.5 0.5 1 21 1326 1346 1326 1347 0.95 17 23 0.00096 0.072 14.0 0.6 1 23 1357 1379 1357 1379 0.93 18 23 6.2e-05 0.0046 17.7 0.4 2 23 1469 1491 1469 1491 0.93 19 23 2.6e-07 1.9e-05 25.2 1.4 3 23 1498 1518 1497 1518 0.98 20 23 0.0087 0.64 11.0 0.1 1 23 1537 1560 1537 1560 0.95 21 23 0.073 5.4 8.1 0.0 1 23 1582 1604 1582 1604 0.98 22 23 0.0084 0.63 11.0 0.5 1 23 1610 1633 1610 1633 0.95 23 23 0.0002 0.015 16.1 0.4 1 23 1641 1664 1641 1664 0.96
Sequence Information
- Coding Sequence
- atgaGTTTGGATTGTGTTCGTGTTTGTAGACTATGCTTGTCATCTCGAGGCGAATTACTGCCCATTTTTCCTACCAATCCTACCACCAGTCAGGATGACTCGGAGCCTTCCGATCTCTCATCAAAAATTAAGGATTGCGTGGCGGTCCAGataaacGAGAATGACGACTTGCCCTTGAAAATCTGCAGGAAATGCCATGACAATGTTAATAACTGGCACTTGTTTAAAGGAGTTTGTGAGAGGACTCAAGTCAAACTTCAGACCTTGACAGGAAAAGATGGAAGCCAACTTGATAAGgtgaaaataaaaaatgaaatattctCTGATGAAGCCTATGATGATGGTGTTGTAATTGATGGTTCATACACAGAAAATGAGAATAATGCCAGAGCAAATAAAGTGCAGCCTGAAGGCCCCCCAATCTTGGCATCACTTGGGCTCACACCAAAGAGTGAtaagAAATGTGTGGATCCTCGGATGGATTGGTCTCGAGTTCTTGCTATATTGGACTTGGTTCGAGAAGATGATATGATTGAATCTATCCAAACAAAAGAAGATGTAGAGAAAGTCTTAGAATCGTATCACGATTCTGAATCAGAGGTTGAAATGCTGTCTGAAGATGATAATATAAGTCGCGGGAGATCCCAATATTATTGTAGAAATGgacaaataatttcaaaaaagcCTCAGACTTCTATCAAGggaGTTGAGAGTGAGAAAGATGATGAAGAAGAAGACGACGAAGAGGAAGAGATGGCGGAGCCTGTTCAGCAACTGTCTAAAGTCTCTAACATGCCTGAGGTGTCAATAACCGTGATGCGTCCATCGGGCGAGACGCTCCAATCAAGGCAAGGTATTCAGCAGCTTGCATCCAAAGATTGCCTTGTCTGTGGACGAGCTTATAGATACTCTCACAATGCCAGGCGACATGAACTCACAGCACATAGCTTCGATAGGTACACAAACAAAGTaacaaataagaaatctaataTTATGCAACCAAAACTACGTCCAAATCCATTCAACCCCAAAGCCAGACTGATGCCGAACCCAATCAGCAACAAAATGAAGTTTTTACACAAAGGTgttccaataaaaaatatgaaatccAGAACTATTTTACCACCCAGACCAGTTCCTATTAAGTCTTCGAAATCTGCTTCTAACAGCTTACCATATCCATTGCGCATTAAAGCTCTTAaagatttacaaataaaaaagaaagagCCACAAATCTTGAAGACTTTATTGACTACAAAACCAGAAGTATTAGTATCGGAACCAGAAATCATGAATTCAGGTCCTGAAAGCCCAGAAACTTTAATTTCGGAACCAGAAATTGCATCTTTCCAAGTTGAAGCAATACTATCTGAACCAGATGGTTACGATCAACAACAGGATGATGAAATAGGTGAGCCAGAGAACAACCAAAATCACCAATACAATACAGTTGAAATGGATTCTGATAATGAAGTTGAAATCGAAATTGCTAGACAAAAAGTAAGTCTCGAAGACATGAAAAATGACCAGGAAGtcgaagaagaagaagaaaattatGAACAAGATGAACATGAACAACATCTAAGTGAAAATGAAAGGGAGGAGGGTGGAGAAGAAGTTACAGAAGAAAACAGGCAAGATTATGAAGACGAAGAAAACCAAGATAATCATGATGAAAATGATGGAGAAGTAAAAGTGGATGAAAAAGACAATGAAGATGATCTTGATGAAAATGCTTATGACAATAGCCAAATCAATGAAGAAAATGATGAAGATGATTTGCATGTTGAAGAAATAACGCCAAATATAGAAATTCACGAAGAAATGCAAACAAACAACTCATACAATAGTGagataaatgaaaatgaagatGAGCTTGATGAAACAGGTAACAACGAAGGCGATGAAATGAAAGATGAAATGAAAGTCCTGGACCCTAACAAGCAATATGTTACCAAAACACAAAAGGAATTCATACTAAAAAACCGTGACATTATTGAACAGATTAATACTAAGAGATGTTTATGTTGTGATAGGGAATATCCACGCCGAAAAGCGGTTATTCAGCATTTGCAGAAAAATGGCCATAAGGTTCCAAAACATACTTGTTACAACTGTGTTATAACTTTTGGACACATAGGTGCATTACTTAGTCACATGAGAGCTGACGCTTGTACGAATCTGTGGAAAGTTATCTACAATGACGATGGCATTACTGATGATATGGTTATTGAAGACGAACCTCAAGGCAACAAAATCCAAtacaaagatatttttaactcTAGGTCATATGCATGCAAACTGTGCCCAGCCAAGTTCCAATTAAAGCAGTTCATAATGAAACACGTGTTAGATTGTCACGAGGATGGGCAGTCGAGAGTGCATCTTGCGTGCGTTCACTGTGGATCTAGGTTTAAAGATAAATCATTGTGGAAAAAACATATTCGAAATGGAGAATGCACAGTTTACATTGCTTGTGATCTATGCTCAGAAAAGTTTGTAAATATGCAGGATTTCAACGACCATGCGTTAGCTATACATGCAGGTGACTTAGATAATGCTGACAATAAATGTGTCGACGGACGTCCCACCGATTGCACATTATGTGGAAAGAAAAATAGTAGCTACCCTAACCTAATAAGACATCTGCGTAGCGCTCATGACGAAGATAAGCCATATTATTGTCAACACTGCGATGCTAAATTTGAACAGTCGGTAGATTTAAACAAACACATTTACAAGGCCCATTCAGATCTAAGTTTTGGTGTTCAAAATTCGGAGCCTGACATGTCAATAGTAAAGGAAGAAGCTGAGGAATATCATTACTCTTGCACTGAATGTAATGCTATATTTGAAACAGTTGATGAATGGACAGACCATCAAGTGGCTGAGCATAATCAGGTGGCCCACCATTGCGACCAGTGTGAGAAAAAGTTCCTTCGACCTTCAGAACTTGCAGAACACAAAAATACTCATTTACGGGTGAAGTTCTATCCATGTAGTATTTGTTCAAATTCATACAGCACCCCTCAAAAACTATCAGAACATGTTCAAAAAGCTCATCCTGGAGCTGCTGCATTTACTTCAGGTGACACAGAATTCTATTGTCATATATGTATTAGATCGTTCAAAAGCCGACAAGCATATTCAAACCATATGCGCATTCATTCCAAGGTCCCTACGACAAACAGAAAGCCTGGCGAACCTAAAGGTTTTGCTCCTCAAATTATTGGAAAACCGATTAAGCAATTTCCAACTGTGCAACCTGGTAtgatttacaaaacaaatcttaATGTTCCTAATGCACCTTATTCTTGTGATATATGTGGTAAAGGCTTCATgcataagaaaaatatatggaaaCATAAGAAAGTTCTTCACGCAGACTTGTTAAATGATAGGAATGACAGTGAAGAGAACACTATGCAAGCTTCGACTGAAGACGATGAATTAAATGTGGATGAGAACGGTGCCATACTTTCGACTCCTCAATTCAATAGTTTTAACTTTGCAAACAGTCATCCAACTCCACAACCAGATCCTGTTCCATTTTCTTGTGAACTGTGTCATAAACGTTTCCCACTTAAAACAAGCTTGTGGAAACACAAGCGAGCCAAACATGGAATAATTAATGCGAGTTCAATGAATGACACCCAGTCTTATACGCCACCAAGCGGAGACAGTAGTAGCAGGTCAAGTTGTACCATTTGTAAGATAACATTTTCTGATAAAAAGTCGTACTATAGACATAGAAAGAATGTGCACAAATCAACAGCACAAATGTGCAAAATCTGTGGGAAACCTCTTAATTCTACCCTAGAATTGTATGAACACTTGAAAGCTGCTCACGCTCGAGAATTGCTCGGTTATAATGCCAACCAAGGACCCAGTAAAATGCAAGACACGAGCCAGGACTTAGACGGCGAATACGAAGAAGCTGAACCAGTCGACCCTAGTGCTGATTACCAAGCGCGATATCCCTGCGATACTTGTGGAAAACACTTCGTTGGACTATTGGCATTACAAAACCATCAGTGCATTAATCAGTCTACATCTCAATTTGCAACATTTGATTGTGAAATTTGCCATAAAAGTTATACGTCTATAGCGGCTTTAAAAAGTCATCGAGGCTGGCACTTGCGCTCACCTGACGGAAAAGCAGCTGCCAATAACAGTGGTTTATGGATGCCGCAGCACAAAGTGACCAACAAAGTCAGTAAGCACGAGGTCGTTGATCCAGTACAATTGGCTCGCGTACAGCACTCTACGCCTGCAGCAACGGCTGTCAAGCGGAGGTTACCCCCTGAAGTAGAAGTTACCGTCGTCAACCCTAACAAAATACTCCGTTCCGACGATTCCATCGAAGCTGAGCAGCACAATCTCTCTGGTGGTACAGATGATAGGTATTGCACCATTTGTGATAAGGAATTCACAAAAAGAGCTGCGTTCCAGCGTCACATGGACGAAGTACACCAACCGAATTCTGTATTCTGTCCGGTTTGCGATAAAAGCTTCACTCGCAAGTCGACGCTGTTAGTGCACATGAAGAAACACTACGAGGTCGGCGAGGGAAGTTCTGGCGTTAGCGGCCAGGTGGAAGAGGAGGGGTACGCGTGCGACATGTGCGGAGGGCAGTTTAATAGCGAACGTGCGCTTAAGGTTCATCGCGCGAGGATGCACGGAGACGCCGAGgaggaggaagaagaagaGGAGGAGGAGGAAAGGGAGGCTCCTCCGGGGGAGTTCACGTGCGGCCAGTGCGGGGACGGGGTCGCTACGCCACGGGACCTCATTGCGCATAGATCCATGCACGCCACACCCACCAAGTTCTTCTGTAACATATGCAAAGTGTACTTTGCTCGTGCCATCGATCTCTCCACGCACACAAGGGCGCGGCACTCCGATAATGAGAAGGTGTACTTTCCCTGCGCCATGTGCGACCGCTTTTATATGAACAAGAAGAGTTTACAAAGGCACATCGAAATGGCGCATTGA
- Protein Sequence
- MSLDCVRVCRLCLSSRGELLPIFPTNPTTSQDDSEPSDLSSKIKDCVAVQINENDDLPLKICRKCHDNVNNWHLFKGVCERTQVKLQTLTGKDGSQLDKVKIKNEIFSDEAYDDGVVIDGSYTENENNARANKVQPEGPPILASLGLTPKSDKKCVDPRMDWSRVLAILDLVREDDMIESIQTKEDVEKVLESYHDSESEVEMLSEDDNISRGRSQYYCRNGQIISKKPQTSIKGVESEKDDEEEDDEEEEMAEPVQQLSKVSNMPEVSITVMRPSGETLQSRQGIQQLASKDCLVCGRAYRYSHNARRHELTAHSFDRYTNKVTNKKSNIMQPKLRPNPFNPKARLMPNPISNKMKFLHKGVPIKNMKSRTILPPRPVPIKSSKSASNSLPYPLRIKALKDLQIKKKEPQILKTLLTTKPEVLVSEPEIMNSGPESPETLISEPEIASFQVEAILSEPDGYDQQQDDEIGEPENNQNHQYNTVEMDSDNEVEIEIARQKVSLEDMKNDQEVEEEEENYEQDEHEQHLSENEREEGGEEVTEENRQDYEDEENQDNHDENDGEVKVDEKDNEDDLDENAYDNSQINEENDEDDLHVEEITPNIEIHEEMQTNNSYNSEINENEDELDETGNNEGDEMKDEMKVLDPNKQYVTKTQKEFILKNRDIIEQINTKRCLCCDREYPRRKAVIQHLQKNGHKVPKHTCYNCVITFGHIGALLSHMRADACTNLWKVIYNDDGITDDMVIEDEPQGNKIQYKDIFNSRSYACKLCPAKFQLKQFIMKHVLDCHEDGQSRVHLACVHCGSRFKDKSLWKKHIRNGECTVYIACDLCSEKFVNMQDFNDHALAIHAGDLDNADNKCVDGRPTDCTLCGKKNSSYPNLIRHLRSAHDEDKPYYCQHCDAKFEQSVDLNKHIYKAHSDLSFGVQNSEPDMSIVKEEAEEYHYSCTECNAIFETVDEWTDHQVAEHNQVAHHCDQCEKKFLRPSELAEHKNTHLRVKFYPCSICSNSYSTPQKLSEHVQKAHPGAAAFTSGDTEFYCHICIRSFKSRQAYSNHMRIHSKVPTTNRKPGEPKGFAPQIIGKPIKQFPTVQPGMIYKTNLNVPNAPYSCDICGKGFMHKKNIWKHKKVLHADLLNDRNDSEENTMQASTEDDELNVDENGAILSTPQFNSFNFANSHPTPQPDPVPFSCELCHKRFPLKTSLWKHKRAKHGIINASSMNDTQSYTPPSGDSSSRSSCTICKITFSDKKSYYRHRKNVHKSTAQMCKICGKPLNSTLELYEHLKAAHARELLGYNANQGPSKMQDTSQDLDGEYEEAEPVDPSADYQARYPCDTCGKHFVGLLALQNHQCINQSTSQFATFDCEICHKSYTSIAALKSHRGWHLRSPDGKAAANNSGLWMPQHKVTNKVSKHEVVDPVQLARVQHSTPAATAVKRRLPPEVEVTVVNPNKILRSDDSIEAEQHNLSGGTDDRYCTICDKEFTKRAAFQRHMDEVHQPNSVFCPVCDKSFTRKSTLLVHMKKHYEVGEGSSGVSGQVEEEGYACDMCGGQFNSERALKVHRARMHGDAEEEEEEEEEEEREAPPGEFTCGQCGDGVATPRDLIAHRSMHATPTKFFCNICKVYFARAIDLSTHTRARHSDNEKVYFPCAMCDRFYMNKKSLQRHIEMAH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -