Cnem020673.1
Basic Information
- Insect
- Choreutis nemorana
- Gene Symbol
- -
- Assembly
- GCA_949316135.1
- Location
- OX438624.1:3780856-3783159[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 5.2e-06 0.00039 21.1 4.0 1 23 9 32 9 32 0.95 2 19 5.6e-05 0.0042 17.8 1.1 2 23 38 60 37 60 0.95 3 19 4.4e-05 0.0033 18.2 0.3 2 23 69 91 69 91 0.97 4 19 2.6e-05 0.0019 18.9 3.8 2 23 100 122 99 122 0.95 5 19 4.4e-05 0.0033 18.2 0.5 2 23 130 152 130 152 0.92 6 19 1.6e-05 0.0012 19.6 3.1 2 23 161 183 160 183 0.96 7 19 2e-07 1.5e-05 25.6 1.2 1 23 189 212 189 212 0.98 8 19 0.0014 0.11 13.4 0.1 1 23 244 267 244 267 0.97 9 19 7.3e-05 0.0054 17.5 0.7 1 23 295 318 295 318 0.97 10 19 0.21 16 6.6 1.9 2 21 326 345 325 346 0.93 11 19 0.034 2.5 9.1 1.4 1 23 354 377 354 377 0.93 12 19 0.027 2 9.4 6.9 1 23 399 422 399 422 0.95 13 19 1e-05 0.00077 20.2 1.1 3 23 430 451 429 451 0.96 14 19 4e-05 0.003 18.3 2.5 2 23 458 480 457 480 0.92 15 19 0.00077 0.057 14.3 2.5 1 23 486 509 486 509 0.98 16 19 0.59 44 5.2 4.8 2 23 517 539 517 539 0.95 17 19 3.3e-05 0.0024 18.6 0.3 1 23 546 569 546 569 0.97 18 19 0.00011 0.0079 17.0 0.8 1 23 576 598 576 598 0.97 19 19 0.00024 0.018 15.9 2.3 2 23 611 633 611 633 0.97
Sequence Information
- Coding Sequence
- ATGTACTCCAGTTTCCCAGACAGCTTTATTTGCGATTACTGCAGCAGATCATTTACAAGGAAGTACAACCTTCAAACGCATATCGAAAATTGTCATCTAAACAATACATGCACTTGTCATATTTGTGACATGAATTTCGGCAGTCCAAGTGGCTTGCAGTTGCATATGATACGTGGCCACAACAGCCAAGGAAAGCCCTACCCTGAGTGCGATATCTGCTCTAGAGTGTTCACAAGAAGACAGAACATCATGTCTCATATGATTACAGTACATCTACAAGGTATTGGCCCGCAAATACGCTGCTATCTTTGCCATAAGACTTTTACGACTGAGAGAAACTTGAAGCGCCATTTGAACCAACTGCACAATCCTGATGCAGAATACCCCACTTGCTATGAATGCAATAAGGTGTTTAAAAGTCGCAGTTCATTGTCTGCTCACGTCTTAGCTTTTCATGATGACAGCGGCAAAGGCGCCAACCAATGCCAACTCTGTGATAAAGTGTACACAAATaaccggaacctcaagcgtcaCGTGGAAACTTGTCATGGCGAAAAAGAAGACTTCAAATGCGATCTGTGCCCTAAAGTGTACAGCTCTAACCAAAGTCTAAGAAGGCATATAAGAACAAATCATGAAGCGAGTGAAGGCGCTGAAAGATCCGACGATAAAAGCAATGAGGCTATTGATATTAGTGACGACGAATACTCGAGTGATGATAGGCATGAATACGTATGTGTAACTTGCAATGAACCTTTCGACTTCGAGCCAGATCTACGCAGACACGTCAAAATTGAACATTCCTTCGATGTCTTCTACAAGTACTGTAAAGAGTCACTTATTAAACAGAATACGGAGTCCTATAGAAAGAGAAGGATGGATTTCAACTGCGAGTTCTGTAATTTCGTATTCGATAATGTTTACGAACTCAAAGACCACATGAGAGTAACACATGATAGAGATTACAGCATGTCCACGTGTAACGTGTGCTTCAGTAAATTTTACAGTAAAGATACTTTTAAGGAACATAAGAAAATGTGCTTTCCGCCACCGGACGCTCACGCTTGCAATTTGTGCGACAAACTATTTACAGATATAAGCAGTCTAGAATTTCATACGAAAATATTTCATCCTCAATCGAATTTGGCTTTAGGTAGTgacaattttgatttgaaagcCGATAATACTGGGGGTTATTTCTGCGTACACTGCAACAGGATGTACTACAGCAGAAGATCTTTGAAACACcatgtcaaattaaaacacaCAACGAACGAGGCTGTCGACTGCGAAATATGCGGAAAAGTTTGTAGGAATAAATACTATTTGAATTCTCATATTAAACTGGTCCATAATAACGATTCATGGTCTAAATGTGATTATTGCGACAAgcagtttaaaactaaaagaaacATCCGACGCCACATTGAATTCACTCATCTAGGTATACAAAGATACAAATGTATGGAGTGCGAGACGCTTTTCAAGGAAAAGAGAAGTCTACGCAAACACGTCCGTTCAAAACACCCAGACTCTGCCTTATTCCCACAGTGCCATCTGTGCTATAAAAGATTCGAATCCGCCAAATCCTGCAAAATTCATCTCAAGCTAATACACTCGTTTAACATGAACACGTTCCCATGTGATTTGTGCTCAGTCTCCTTCACTTCCCAAGAGTCGCTCTCTATTCATATAAACACGAAACATTCATCTGACGATGAGATCTATAAGTGCAAAGAATGCAACCTTGTTTTCAATGGGCAGGATAAATTTGAAAGGCATAAAGCCGTTCATCCTAACGTAGCGTCTTCAGTAGCAAAAGCTCAACCACGCTGTGTCATATGTTCTAAAGACTTCTCGTCAATGAAAACACTGAAGCGACATATAAAGAGATTCCACGCAGACTTCGATAAAGATGAACTGGCTAATTACGGTACTAAACAGAGAGATTTCAGTATCGAATGCAATAACTGCCTAAAGTATTTCAATGATGATGACTGCTATAACGTATTTTTGAAGAACAAACATCTAAGCCAGTCAGTCATTTTCGAGTGTGAAGTGTGTTGTTTCTCCTGTAACGCTTTAGAGTTTGCTATTCAGAGATATAAAATGAGCGACTTTGACAAaagtaaaatgattttaagtgAGTTCTGCACGACTGAGATGAGCGAACAGGAATCCAATGATTCTGATGCAGCTGCAGACTTCGTACAGTCAGATAGTTATGCAAACGTTAAGGAAGAGCCTTGCGATTTAGACTTCGACGAGTACGACCTCAAAACGGACCATAGCGTCTTTCTCTGA
- Protein Sequence
- MYSSFPDSFICDYCSRSFTRKYNLQTHIENCHLNNTCTCHICDMNFGSPSGLQLHMIRGHNSQGKPYPECDICSRVFTRRQNIMSHMITVHLQGIGPQIRCYLCHKTFTTERNLKRHLNQLHNPDAEYPTCYECNKVFKSRSSLSAHVLAFHDDSGKGANQCQLCDKVYTNNRNLKRHVETCHGEKEDFKCDLCPKVYSSNQSLRRHIRTNHEASEGAERSDDKSNEAIDISDDEYSSDDRHEYVCVTCNEPFDFEPDLRRHVKIEHSFDVFYKYCKESLIKQNTESYRKRRMDFNCEFCNFVFDNVYELKDHMRVTHDRDYSMSTCNVCFSKFYSKDTFKEHKKMCFPPPDAHACNLCDKLFTDISSLEFHTKIFHPQSNLALGSDNFDLKADNTGGYFCVHCNRMYYSRRSLKHHVKLKHTTNEAVDCEICGKVCRNKYYLNSHIKLVHNNDSWSKCDYCDKQFKTKRNIRRHIEFTHLGIQRYKCMECETLFKEKRSLRKHVRSKHPDSALFPQCHLCYKRFESAKSCKIHLKLIHSFNMNTFPCDLCSVSFTSQESLSIHINTKHSSDDEIYKCKECNLVFNGQDKFERHKAVHPNVASSVAKAQPRCVICSKDFSSMKTLKRHIKRFHADFDKDELANYGTKQRDFSIECNNCLKYFNDDDCYNVFLKNKHLSQSVIFECEVCCFSCNALEFAIQRYKMSDFDKSKMILSEFCTTEMSEQESNDSDAAADFVQSDSYANVKEEPCDLDFDEYDLKTDHSVFL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -