Cnem019534.1
Basic Information
- Insect
- Choreutis nemorana
- Gene Symbol
- -
- Assembly
- GCA_949316135.1
- Location
- OX438622.1:3417192-3418373[+]
Transcription Factor Domain
- TF Family
- zf-BED
- Domain
- zf-BED domain
- PFAM
- PF02892
- TF Group
- Zinc-Coordinating Group
- Description
- The BED finger, which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain [3].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 8 0.39 6.2e+02 0.9 0.1 15 41 31 54 25 57 0.70 2 8 0.018 29 5.2 0.1 13 43 82 109 77 110 0.82 3 8 4.1 6.5e+03 -2.4 0.0 14 25 128 139 123 141 0.69 4 8 8.9 1.4e+04 -3.4 0.0 16 27 214 225 210 226 0.78 5 8 7.3e-06 0.011 16.1 0.2 10 43 240 268 235 269 0.90 6 8 0.012 19 5.8 2.5 5 26 262 283 262 285 0.90 7 8 0.0022 3.5 8.1 2.0 14 37 299 324 288 324 0.84 8 8 1.3e-06 0.0021 18.4 2.0 15 43 328 353 324 354 0.91
Sequence Information
- Coding Sequence
- ATGGAGTCTGCTCGCAAGTTAGCGATAAAGCGGAACAATGTCGAATACGTGTTACAATACAGTAACGTGACACCATTCTTGTGGTACAAGTCCAAGTATAGATGCTTCTACTGTTCAGAGCCCATGAAAGACGTCGATACACTGCGCGATCACACGACTAAAGTTCACCAATTTGCCAACTTAGAGCTAGTCGTATTCGATCGAACGAAATACAATAGAAACAGAGACGCGGCAGTGAAAATAGACGTCACTGGGATATCTTGCAAGTTGTGCACTAATGCGGTAAACAATCTTGAAGAATTGATACATCATCTTATAATTGCCCACGACGCGGAATACGATGTCAGTGTACCAAACTGCCTTTTGCCTTTCAGACTAGACAAGGAAAATCCGACTTGTGCAACGTGCGGCATGAAATTCGTTTTCTTCGAGTACCTTCTCCGACATGCGAACAAATATCACCTATCTCATGAATACATGTGTGACGTTTGTGGGACAAGCTTCCAGGGAGAAAACCATTTGAAGATGCATCATCGATATTACCATAGGGATGGTGGTTACAACTGCGAGGAGTGTGACATAAATTTCACCACATTatcgaaaaaaattatacatgaaaaaaatattcattctGTTAATCTAGCCACGTGCCCACAATGTCCGGAGACGTTTAAAAGTCCCTACCTAAAGAAGTTACATATGTGTAAAGTACATCAAGTGGAAGAGATGATGATCAAATGTCCGTATTGCTCGAAAGTGTTTCCGCAGGAGAGTGTCATGTCTCGGCATATGAGAAGGGTACATTTACGGGAGAAGAACGTAGAATGTGAAGTATGCGGGGACAAGTTTTTTGGTCCCTACGATGTTAAATTGCACATGGTCAAACATAATGGCGAGAAAAAGTTTGCTTGCTCAGTGTGCGGAAAGAGATTCTCTAAAAAGAGCAATCTGAATACTCATTCTATGATTCACACTGGAAAGAAGAATTTCGTTTGTCTATTCTGCAATAAAGCGTTCTCGTACCAAACGAATCTCAAAATGCACATAAAAACTAGACATACTAATCAGACCGCAACAGAAGTGACACAAGTTGAAGATTGCGAAATTGATCAAATCGTGCATATGGAGTTCATTACGGAAGAGTTGGAGGGCGCGGAAGTTACTGAGGAATACATTTCTTAG
- Protein Sequence
- MESARKLAIKRNNVEYVLQYSNVTPFLWYKSKYRCFYCSEPMKDVDTLRDHTTKVHQFANLELVVFDRTKYNRNRDAAVKIDVTGISCKLCTNAVNNLEELIHHLIIAHDAEYDVSVPNCLLPFRLDKENPTCATCGMKFVFFEYLLRHANKYHLSHEYMCDVCGTSFQGENHLKMHHRYYHRDGGYNCEECDINFTTLSKKIIHEKNIHSVNLATCPQCPETFKSPYLKKLHMCKVHQVEEMMIKCPYCSKVFPQESVMSRHMRRVHLREKNVECEVCGDKFFGPYDVKLHMVKHNGEKKFACSVCGKRFSKKSNLNTHSMIHTGKKNFVCLFCNKAFSYQTNLKMHIKTRHTNQTATEVTQVEDCEIDQIVHMEFITEELEGAEVTEEYIS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00323719;
- 90% Identity
- iTF_00323719;
- 80% Identity
- iTF_00323719;