Cnem012421.1
Basic Information
- Insect
- Choreutis nemorana
- Gene Symbol
- -
- Assembly
- GCA_949316135.1
- Location
- OX438610.1:6979351-6996824[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 7.9 4e+03 -2.0 0.0 19 30 17 28 17 29 0.87 2 2 5.1e-07 0.00026 21.0 0.0 4 37 85 118 83 127 0.81
Sequence Information
- Coding Sequence
- ATGGCTTGTTTTCGACCCCAGCAAGGCTTAAACTCCACCAAAGAGGAGACGAGACGAGCGAAGCGGAGATTTGATATAAACAACCAATTGAATTTCAGTATTCACACATCTTGTCTCCGCATGGAGATCTCTGAGCGGAGATgtattatcatatttttatggaaGCGGAGATGTGAACTGTACGCTGAAATTGAGCTGGACGAAGtGCCTCGGAGTAAGACGGGCAAGAAGAGAGAAAAGCATTGTGCTGACGTGCTGACAGAAGCCGTCAAGGCCATACAAGAGGGGTCTACAATTAGAAAAACCGCAGAAAAGTTTAAACTGCCCAAATCAACACTCTTCTTTTACGCAAAACATAACAAAGGGAAGGATTCTGTAAAAGTTCTGCCAAATGATGTTAGGAAGGTTTTCAACGTAGAAGAGGAAGTGCAGCTGAATGCTTATATAAGAAAAGCGGCATTATTACACATGGGCCTGAACACTAAACAAGTTCGGGAACTTGCATATGAATTTGCATTGAAAAAGATGAATCCAAACATTCCTCATTCTTGGCATGAATATAAAATGGCTGGCCTTGGATGGCTCAGGTGTTTTAGAGAGCGAAATCCACAATTATCTTTGCGAAAGCCAGAAGCGACGAGCATTGCAAGAGCTACCAGTTTCAACCGACATAATGTAAATAACTTCTTTGAAAATCTTCAGAAAGTTCTTGACAAATATAAGTTTCCACCtgaatcaatatttaatgttgACGAGACGGGAATATCCACAGTCCATAAACCTCCAAAGGTATTAGCTCCAAAGTCAATCAAACAGCTGGGGAAACTAACGTCAGGTGAAAGGGGAATAAATAATACCATGATCGGTTGTGTGAATGCAGTTGGGAACTCAGTACCTCCGCTGATTGTCTTTCCTAGGGTATTTTTTAAGGACAATATGCTAAAAGGAGCCCCACCAGGTTCCGTTGGTGCGGCTAATAAATCTGGTTGGTCTACAGAGCCCATTTTCAGGCAATATCTGGATCACTTTATACATTTCGTTAAACCTAATAAAGATAAACCAGTACTTCTCATCATGGATAACCATGAGAGCCATATCTCAATAGAAATAATAGATAAAGCCAAAGAAAATGGGATTATCCTTTTGACATTACCACCACACACCTCTAACAACTTGCAGCCTCTTGATAAATGTGTCTACGGGCCATTTAAGAACTACTATAATAAGACAGCTGATAAGTGGATGCTGAATCACCCAGGCAAACCGATCACGATATATGATATCGCAGAAATAATTGGAGAAGCTTATTTACTGGCCTTCACaccaaaaaacataattaaaagcTTTGAAGTCACAGGAATAAGTCCTTTTAATAGGGAGATTTTTACTGACGACGATTTTTTGTGTTCCTATGTCACTGATCGTCCACAGATATCAACAACACAAGAACAAGAAAACATAGCTCCATCTGAATCTGTGGAACTTGACTTGAATATGCCTGATAACTTGGTGTCTGAACGTAGTCCTCCTGTTACATCTTCAAATCCTGACTATTCGCCTTTGCCTAAGCTAAGTGAAGAGAATGAGCAGGTCGAGCTGAGTCCCCCTGTTGTTTCTTcgaaacaaaatgaaattactGTTGAGGTTGATGTTCATGCTCCGCctaaactgaaaaataagGAATCGCAAATAGATCAGGTGCGTGCTCTGGTCCAATCCGATTTAGAAAAAATTTCTTTGCTAGAATCAACACAAGTTCATGATGAACCccaaatgcaaaaaaataaatatattcaatcGAATGCTGTAGCAGGTCCAGCCCTTGATGAATCTGTTGCGAATTCCAGCTTAGATGACATGTCTCTATTACAATCCATACGTCCATTCCAAACAGCAGGCCCAAGAAAGTCAACACAAAGGGGTAGAAAGCCTGGTAGAACTCGAATTTTAACGGATACTCCGGAAAAACAAGCTTTACATGATGAAGCGATGAAAAGagctgaaaataaaagaaaatctgtGAAAcctgaaactaaaaaaaatagatgtaaaaagtcgaaaaaagaaattccaaAACTTAATATTCTTGAAAATAAGCAACTGCCGCTAGTGGCATGTaaagtatgtaaaaaaactgATCATAAGAAAAAGAATATGATATCCTGCAATTTGTGCAAGTCATGGTATCACCTGAAATGTGTTAAAAAGTCCCACAAAGAACAGTTTGATTCTGATGACGAAAATGGATTCATTTGCCAAGACTGCTATATCTTGGAGGATGATAGTTTGGATGATATTTCTGATAATGACAGTGACGAATTTGCTACGGAATTGTATGAGGAATATCTTCAGTCCAAAAATTAG
- Protein Sequence
- MACFRPQQGLNSTKEETRRAKRRFDINNQLNFSIHTSCLRMEISERRCIIIFLWKRRCELYAEIELDEVPRSKTGKKREKHCADVLTEAVKAIQEGSTIRKTAEKFKLPKSTLFFYAKHNKGKDSVKVLPNDVRKVFNVEEEVQLNAYIRKAALLHMGLNTKQVRELAYEFALKKMNPNIPHSWHEYKMAGLGWLRCFRERNPQLSLRKPEATSIARATSFNRHNVNNFFENLQKVLDKYKFPPESIFNVDETGISTVHKPPKVLAPKSIKQLGKLTSGERGINNTMIGCVNAVGNSVPPLIVFPRVFFKDNMLKGAPPGSVGAANKSGWSTEPIFRQYLDHFIHFVKPNKDKPVLLIMDNHESHISIEIIDKAKENGIILLTLPPHTSNNLQPLDKCVYGPFKNYYNKTADKWMLNHPGKPITIYDIAEIIGEAYLLAFTPKNIIKSFEVTGISPFNREIFTDDDFLCSYVTDRPQISTTQEQENIAPSESVELDLNMPDNLVSERSPPVTSSNPDYSPLPKLSEENEQVELSPPVVSSKQNEITVEVDVHAPPKLKNKESQIDQVRALVQSDLEKISLLESTQVHDEPQMQKNKYIQSNAVAGPALDESVANSSLDDMSLLQSIRPFQTAGPRKSTQRGRKPGRTRILTDTPEKQALHDEAMKRAENKRKSVKPETKKNRCKKSKKEIPKLNILENKQLPLVACKVCKKTDHKKKNMISCNLCKSWYHLKCVKKSHKEQFDSDDENGFICQDCYILEDDSLDDISDNDSDEFATELYEEYLQSKN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00323455;
- 90% Identity
- iTF_00323455;
- 80% Identity
- -