Cnem018292.1
Basic Information
- Insect
- Choreutis nemorana
- Gene Symbol
- Mblk-1
- Assembly
- GCA_949316135.1
- Location
- OX438619.1:5581043-5597128[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 4.6e-13 2.3e-10 40.4 0.0 1 38 159 197 159 202 0.95 2 2 1.8e-18 9.2e-16 57.7 0.0 1 43 366 409 366 411 0.95
Sequence Information
- Coding Sequence
- ATGTGTGCACAACATGAAGCGATTTCATGGTTAGTTGAAGATTTAAGTCCGGCATCAGAATCGGACAGCAGCTCGGTGTCCGGGGCCAAGAGTCCGGCGGCGGCGCCCCAGCTCCTGCAACATCTGCTGCAGCTGCAACTGCAGGCACAGACACCTCAAGCCATCGCGCAATTCCAGCAGATGCTCACGGCGCTGGCGACCCTTGGCACGGGATTGGTGCACCCCGCGCTCACCCAACCCTGGCTGATGTCACGGCTAGTCCAGGGAAGACCTCCCGTCGATAGTAGGCTAGCCGAAGTGGACAAGGTGTCAGTGCCGGCGTCATCACCGACGTCAGCGGAACAGCCCCTGGACCTCAGTGCGAAGTCCACCTCCAGCACCAGTGGCACCCCCCCACCTGACACCAAGGATCACTCCAGATTGAAACGAACGATTTTAGAAGGTGCGGGAAACAGTGCGACGCGGCGCGCATACACTGAGGACGAGCTGGAGTCGGCGCTGCGGGACATCAAGTCCGGACGGCTCGGCACGCGGCGTGCTGCTGTCGTGTACGGCATCCCGCGCTCCACGCTCCGGAATAAGGTCAACAAGTTCGGCCTCGTTTCTGAGCAGCCGGACTCCGAGCCCGAGAGTGACTCGGAGCGCACAGACTCGCCCACGTCCGTCATACTTAAAATCCCCACGTTCCGACCTCCTGAAGATAAGAGCCCGTCGCCGGCTGCGCCGATCCCCAACCCCGTTACGCCTGTCACGCCGATCATCCCCACGCAACCCTGCCTCAGTGCCAACCAACTCCTCCTGCCGCCATCGGTGTTCGCTGACTCCCCGCAACATATCTTCACGTCGCTCAGCGATGTCATAGCCAAGAGTATCAGCCAGAAGTTCCAGCAGCCACTTGACAGGCCACAACCGAATACCGATCTGTCTCCCTTCATGCGAGTGCAGGACAGGCACGTGTCCGTTATCAAAACTCCTACTGAGAATCACAGAAATTTCCCAGCTCCTAGCAACTCCCGTGCGCCGACAAATAATAACGGTCAGCAAGCGTCTGGCGGCAAGGGGACCAGACCGAAACGAGGCAAGTACCGGAACTACGACAGAGACAGCCTCGTGGAGGCGGTGAAGGCGGTGCAGAGGGGGGAGATGTCCGTGCACCGAGCTGGCTCCTACTACGGCGTGCCGCACTCCACGCTCGAATACAAAGTCAAAGAGCGCCACCTGATGAGACCGAGAAAGCGCGAGCCGAAGCCGCAGCAAGACATAAAGCCGCAGCCACCGAAGCCTCCTCCACTGAAGCCGCCGACAAAGCCGTTCTCCAACGGGATGAACGGTCCCGAGGCGGGTGCATATGCGGCAGGATACCCGTTCTGGGCAGGCGGCGGGTTCAGCGCGCCGTCGCCGGACCCGGCCGGGCTGTACGCGTCGCACATGATGCGGCGGCTGCGCGAGGAGGCGCCGCCGCCAGCCAATGGATCATTCTTGGAGGGCATCATCCGCTCGAGCCTGGAGCGGCCGGGCGCGGCGCTGCTGGCGCGGCTGGCGGAGCCGTCGGAgccggcggcgcggcgcgctcGGCTGGAGGACGGCACGGCGCTGGCGGCCGACCTGCGCGACGCCGTGCAGCGCCTGCGCGCGGACAAGCTGCGGCCCCGCAACGGCGCCGCgtcgccgcccgcgcccgctcCGTCGCCGCCGCCGGCGCCGCCTGACTCGGCCTAG
- Protein Sequence
- MCAQHEAISWLVEDLSPASESDSSSVSGAKSPAAAPQLLQHLLQLQLQAQTPQAIAQFQQMLTALATLGTGLVHPALTQPWLMSRLVQGRPPVDSRLAEVDKVSVPASSPTSAEQPLDLSAKSTSSTSGTPPPDTKDHSRLKRTILEGAGNSATRRAYTEDELESALRDIKSGRLGTRRAAVVYGIPRSTLRNKVNKFGLVSEQPDSEPESDSERTDSPTSVILKIPTFRPPEDKSPSPAAPIPNPVTPVTPIIPTQPCLSANQLLLPPSVFADSPQHIFTSLSDVIAKSISQKFQQPLDRPQPNTDLSPFMRVQDRHVSVIKTPTENHRNFPAPSNSRAPTNNNGQQASGGKGTRPKRGKYRNYDRDSLVEAVKAVQRGEMSVHRAGSYYGVPHSTLEYKVKERHLMRPRKREPKPQQDIKPQPPKPPPLKPPTKPFSNGMNGPEAGAYAAGYPFWAGGGFSAPSPDPAGLYASHMMRRLREEAPPPANGSFLEGIIRSSLERPGAALLARLAEPSEPAARRARLEDGTALAADLRDAVQRLRADKLRPRNGAASPPAPAPSPPPAPPDSA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -