Cnem011313.1
Basic Information
- Insect
- Choreutis nemorana
- Gene Symbol
- -
- Assembly
- GCA_949316135.1
- Location
- OX438608.1:9615030-9625435[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 5.9e-11 3e-08 33.6 0.0 1 38 209 247 209 252 0.89 2 4 3.6e-10 1.8e-07 31.1 0.1 2 39 264 301 263 305 0.92 3 4 1.2e-12 5.8e-10 39.1 0.1 2 45 319 362 318 362 0.96 4 4 1.2e-18 6.1e-16 58.3 0.1 1 44 369 413 369 414 0.95
Sequence Information
- Coding Sequence
- ATGCGCCACGCAGCGAGCGACGCAGACTCCGGCGGGTGTGTGCCGAATTCACTTTCATTTGCGACATCTCATCGTTTCCCGAAGGTCACCGAGCGCGGGCATTGTCCATCGAGCCAGGAAATGCTGGGGCTGGGTTTGTCGCAGGTCAAGATCGAGCCGCCCTCCGAGGATGACGACATCTCGCAGTTGTCCTGCAACTATTACTCCGATCCACTCCCGCCTTACGACGTACGTCCTTTGAAATTAGACACAGAAACACTCCGTCCGGATGACGTACAGAACAATCTACTGCAACTGCAAGAATTACAGGTAGCAAATGGATTGGAGGAATTGTCGCTGGTGGCGCCGGCGGGGCCCGCAGCGACGCCGGTGTGCGTGAAGCAGGAGCCGGCTGAcgcaccgccgccgccggccACCTTCGAGACGCTGGAGACACCTGCCAACCCTGGTCCATCACTAATGGAGAGACAGATGTCGATGCTGTCACAAAGCGAGGAGATGTCTGAGTTCATGCCGCTCATGCCTGTCAAAGAAGAACCTAGTTCTGAGGGagAATCGACCCCGCACTCGGAGGATACTTTCGACCCCCCCTGTGAGTACACTTCGCGAGGGCATAAGAGTTGGACTCAGGAGGACATGGATGCTGCACTTAACGCACTCAAAACTCAGAACATGAGCTTAACGAAGGCGTCGGCGCGGTTCGGCATCCCGTCCACGACGCTGTGGCAGCGAGCACACCGCGCGGGCATCGACACGCCCAAACGCGAGCACACCGCGCGTGCCTGGACGCCGCGCGACCTCAGCACCGCGCTCGCCATGCTGCGCCTCGGCAGGCTGTCCGCCAACAAGGCCAGCAAGGCATACGGTATCCCATCTTCCACGCTGTATAAGATAGCCCGACGCGAGGGCATACGTTTGTCAGCTCCATTCAACGCAGCACCAACATCATGGCGACGTGCTGACCTGTCCCGAGCGTTAGACGCCATCCGCGCCGGCGACTCCGTACAGCGAGCCGCCACGCACTACAGGATACCCACTGGTACATTATACGGCAGATGCAAGCGGGAAGGAATTGAGCTTTCCAGATCCAACCCCACGCCATGGTCTGAAGACGCCATGAGAGAAGCACTGGAGGCAGTCAGGGTTGGCCAGATGTCGATCAACCAAGCCGCTATACATTACAACTTACCTTACTCTTCACTTTATGGAAGGTTCAAGAGATGCAAATACCAGATACAGaACACGCAAGCACTAAATCACACTAATGTCCAAGAAATTCAAGAATTAGAACCGCAAGTCCATCAAGAATTGTATTACCAGCAACAAATGCCTCAAGAGAGTAACTATCATCAGTATGATGCACAACATACATTGATGCACAATACTATGATAGTAGATGATCAAACGTACCCAGATCAAGTAATGTACTACGCACGGGGCGACGGAGTCGTTAGTTGA
- Protein Sequence
- MRHAASDADSGGCVPNSLSFATSHRFPKVTERGHCPSSQEMLGLGLSQVKIEPPSEDDDISQLSCNYYSDPLPPYDVRPLKLDTETLRPDDVQNNLLQLQELQVANGLEELSLVAPAGPAATPVCVKQEPADAPPPPATFETLETPANPGPSLMERQMSMLSQSEEMSEFMPLMPVKEEPSSEGESTPHSEDTFDPPCEYTSRGHKSWTQEDMDAALNALKTQNMSLTKASARFGIPSTTLWQRAHRAGIDTPKREHTARAWTPRDLSTALAMLRLGRLSANKASKAYGIPSSTLYKIARREGIRLSAPFNAAPTSWRRADLSRALDAIRAGDSVQRAATHYRIPTGTLYGRCKREGIELSRSNPTPWSEDAMREALEAVRVGQMSINQAAIHYNLPYSSLYGRFKRCKYQIQNTQALNHTNVQEIQELEPQVHQELYYQQQMPQESNYHQYDAQHTLMHNTMIVDDQTYPDQVMYYARGDGVVS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -