Cfor035355.1
Basic Information
- Insect
- Chloromyia formosa
- Gene Symbol
- grau
- Assembly
- GCA_964017055.1
- Location
- OZ024818.1:10453276-10456997[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 9 0.56 58 5.6 3.8 2 23 294 316 293 316 0.96 2 9 1.9e-05 0.002 19.7 0.7 1 23 349 371 349 371 0.99 3 9 8.9e-05 0.0092 17.6 1.4 1 23 379 401 379 401 0.98 4 9 0.0025 0.26 13.0 2.5 1 23 409 432 409 432 0.94 5 9 0.015 1.6 10.5 1.1 2 23 439 460 438 460 0.95 6 9 1.3 1.4e+02 4.4 0.7 2 23 469 491 468 491 0.94 7 9 0.00022 0.022 16.4 0.3 1 23 499 522 499 522 0.92 8 9 1.6e-05 0.0017 19.9 0.5 1 23 528 550 528 550 0.96 9 9 3.5e-05 0.0037 18.8 6.1 1 23 556 579 556 579 0.98
Sequence Information
- Coding Sequence
- ATGCTTTGCCGTATGTGCTTGCTCGAGTCCGAGAACACCTTGTGCATTTTTGAGCAGGACTCGGTACGGTTTAAGATAGCACCGACCATTGGTCAACATTTCTGGTTTGagCCGGTAAAGGACGACCCAATCTCGATCATGATATGTATAACGTGTTGGTCGAAGATCTCCGATTTCCATACGTACTATTTGAGCGTTGAGGAGGCTCAGCGTCCTTTGACGAAATTTCCGTCCGTAAAGGAGTCCTCATATAGTGTGGAGCAGTTGAAGAGCGAATATGTCGATGAGTATGTGGACGAAAAGGATATGTCTACTGTAGCCGGAACGGATCCAGTCGctAATTTGCCGGTTTCTAGAAATTTTAATGGAAGTTATAACGACGCGGACAATTCGATAAATGAATATGAACAAGACAAGGGCGTGGACAGTAGTTGCTCATCGGATGAAGagcctctagcaaaaaaaatcgctcccaAAAGAGTTCAACATGTTAACGTCGATCCCGAACCCGAAAAGCCTCGGCATGGACGTAAAAAGGGTAATAAAAATAAGTCTAAAATCGTGGATGGCAACGCTACTATCAAAGTTCATATTAACACTAAGCAAGATAGCACCGAATCACAGCCCTCAATCTCTACTGACGATGATTTGATGCTGCCAGTTAAAGTGGAAAATGACACGGATGTATCGATTGAAGAAGTGGGCTGTGACAATGATCAATCCGATAAAGTAGACGATTCGGCCAAAAAGAAACGTTtcttaaaaaataaatcaaaaatgaGCGTGGAAACTGAGCGTGTTGCTAAGAAGGTTAGCGTTTCAGAGTATCGGAAAAAGAACAAGAaatatgatgatgaaatttcgcAATTTATGAGGCTCCACTGTGAATTATGCTCAACCGATTGCGAAACATTTGCCGACGTTAAAAGACACTATCGAACAACGCACAATAGAAGCGGCTATGTGGTGTGTTGTACAACGAGAAAGTTCTATAAACGCATCTTCCTTTACGACCACATACAAAAACATAAGAATCCGGACACATTCAAGTGTAATTTCTGCGAGAAAGTCTACGGTAGTGCATATGATCTGAGAAGTCACCTGTTAACGCATGACAACTCTTCCGAGAAATCGTATCAGTGCGATAAGTGTCCACGACGATTTGCGAAACTCTTTCTTTTGAATAAACACAAAATTATGCACATTCCCAAGGAAGACCACTCGTTCTGTTGTGATATCTGTGGTAAATCGTTTCCTTCAAAGAACATAATGGAGACGCATAGAAGGCAACGTCACGAAATGACTTATTCGAAAATGTGCCACATTTGTGGCAAGGTCATTAACGGGAAAACACTCTTCGACAAGCATCAGTTAGAACACAATGGTATTGCTGATCCAAAGATGCAATGCGAACAGTGTGGCATGTGGTTGAAAAATGCATTTCGCTTGAAAGTTCATACAAAAAACCGACACAGTGAGGAGAATACGGGTGAACATATTTGCAATATTTGTGGGAAGATTATAGTTTCGAAATCTGCACTGAAAAGTCATATCAGTTTTGTGCATTCGGCTCAGCGTAAATACTTATGTAGTATTTGCGAAAAAGGTTTCAAGACACCTTTAAGTTTGAAAGAACATATGACAACGCACACGGGGGATAATTTGTACACATGTCCTCACTGTCCGAAAACGTTCAGTATGCGGTCTAATATGCACTCGCATCGGAAGAAAATGCATCGCGAGGAGTGGGAAGAGAGTAGAAGAAGTCGTGGACTTCCACTCACTACTAATAGCAGGAGAGTTATATAG
- Protein Sequence
- MLCRMCLLESENTLCIFEQDSVRFKIAPTIGQHFWFEPVKDDPISIMICITCWSKISDFHTYYLSVEEAQRPLTKFPSVKESSYSVEQLKSEYVDEYVDEKDMSTVAGTDPVANLPVSRNFNGSYNDADNSINEYEQDKGVDSSCSSDEEPLAKKIAPKRVQHVNVDPEPEKPRHGRKKGNKNKSKIVDGNATIKVHINTKQDSTESQPSISTDDDLMLPVKVENDTDVSIEEVGCDNDQSDKVDDSAKKKRFLKNKSKMSVETERVAKKVSVSEYRKKNKKYDDEISQFMRLHCELCSTDCETFADVKRHYRTTHNRSGYVVCCTTRKFYKRIFLYDHIQKHKNPDTFKCNFCEKVYGSAYDLRSHLLTHDNSSEKSYQCDKCPRRFAKLFLLNKHKIMHIPKEDHSFCCDICGKSFPSKNIMETHRRQRHEMTYSKMCHICGKVINGKTLFDKHQLEHNGIADPKMQCEQCGMWLKNAFRLKVHTKNRHSEENTGEHICNICGKIIVSKSALKSHISFVHSAQRKYLCSICEKGFKTPLSLKEHMTTHTGDNLYTCPHCPKTFSMRSNMHSHRKKMHREEWEESRRSRGLPLTTNSRRVI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -